Xanthomonas campestris pv. raphani: XCR_2579
Help
Entry
XCR_2579 CDS
T01872
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
xcp
Xanthomonas campestris pv. raphani
Pathway
xcp03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
xcp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
XCR_2579 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xcp03400
]
XCR_2579 (ligD)
Enzymes [BR:
xcp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
XCR_2579 (ligD)
DNA repair and recombination proteins [BR:
xcp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
XCR_2579 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
AEL07453
UniProt:
G0CH17
LinkDB
All DBs
Position
complement(2699703..2702252)
Genome browser
AA seq
849 aa
AA seq
DB search
MSLSEYRRKRSFDKTREPEPGKLLPQGQRAIFVVQLHHASRRHYDFRLQVGDALKSWAVP
KGPSYDPAVKRMAVEVEDHPVDYARFEGEIPKGEYGGGHVAQFDHGVWATAGDPEAQLAK
GHLRFELFGSKLKGGWHLVRSSKPARQPQWLLFKEDDAYAGSLEADDLLADVAAAPAEDV
RRAGAGKAQRKALTTVPVPRARARNAWTNAALKLTHARRGDITDAAFAPQLAKLGQAPPE
GAQWVHEIKWDGYRILATVTDGQVRLWSRNALEWTDKIPDIRDAIQALNLRSARLDGELI
AGRGTKEDFNLLQATLWGERQVPLALAVFDLLHIDGVEISEAPLRERKQLLQQVLANAPA
GHLAYSSHVEGDGLEAFRVAGEQHFEGIISKRADRPYRAGRSDDWRKTKQLASQEYVVVG
YTAPKGSRTGFGSLLLATPDPQHGWLYVGRVGSGFSDTLMQEVTQHLHGGGKRPTAHIPT
EDTDLRGATWFAPRFVVEVFYRGVGGQQLLRQASLKAVRLDKDIADLADSDTGDVSPAQA
DVANTPARGRKRANKQAPAQGEPTLSSPTKLIYPDIRATKGDVWEYYHAVMDHLLPEIVG
RPLSIIRCPNGAEKPCFFQKHHTAGLERVSSVRLKEETGSNAHYLVVEDAPGLLELVQFN
ALEFHPWGSHAARPDMADRVVFDLDPGPDVPFAEVKRAATDIRKLLAQLELESFLRVSGG
KGLHVVVPLNPGCDWELTKRFAKGFADALAQSEPDRFVATATKRFRNKRIFVDYLRNGRG
ATAVASYSLRGRPGAPVALPLPWSDLAKLHRANAFTLRDVPDKLRRRRKDPWADIAQIQQ
NLARWADQG
NT seq
2550 nt
NT seq
+upstream
nt +downstream
nt
atgagcctcagcgaataccgccgcaagcgcagcttcgacaagacccgcgagccggagcca
ggcaagctgctgccacaggggcaacgggcgatcttcgtggtgcagctgcatcatgccagc
cggcgccactacgatttccgcttgcaggtgggcgatgcgctcaagagctgggcggtgccg
aaggggccaagctacgacccggcagtgaagcgcatggcggtagaggtggaagaccacccg
gtggactacgccaggttcgagggcgagattccgaagggcgaatacggcggcggccacgtg
gcccagttcgatcatggggtctgggccaccgccggtgacccggaagcacagctggccaag
ggccacctgcgcttcgagttgttcggcagcaagctcaagggcggctggcacctggtgcgc
tcgagcaagccggcccgccagccgcagtggttgctgttcaaggaagacgacgcctatgcc
ggctcgctggaagccgacgatctgctggccgatgtggctgccgcgccagcagaggatgta
cgtcgcgccggggccggcaaggcccaacgcaaggcactcaccaccgtgcctgtgccacgg
gcgcgtgcacgtaacgcctggaccaacgccgcgttgaaactcacgcacgcgcggcgcggc
gacatcaccgatgccgctttcgcaccgcagctggccaagcttgggcaggcgccgccggaa
ggggcgcaatgggtgcatgaaatcaagtgggacggttatcgcatcctggccacggtgacc
gatggccaggtacggctgtggtcgcgcaatgcgctggaatggaccgacaagattcccgat
atccgcgatgcgatccaggcgctcaacctgcgctcggcacggctggatggcgagctgatc
gccgggcgtggcaccaaggaggatttcaacctgctgcaggcgaccttgtggggcgaacgc
caggtgccgctggcgctggcggtgttcgacctgctgcacatcgatggcgtggagatcagc
gaggcgccgctgcgcgaacgcaagcagctcttgcagcaggtcctggcgaatgcgcccgcc
ggccacctggcctacagctcgcatgtggagggcgatgggctggaggcgttccgggtcgcc
ggcgagcagcactttgaaggcatcatttccaagcgtgccgaccggccgtaccgcgccggt
cgcagcgatgattggcgcaagaccaagcagttggccagccaggaatatgtggtcgtcggc
tataccgcgcccaagggcagccgtaccggcttcggctcgctgctgctggccacgccggac
ccgcagcacggctggttgtatgtggggcgggttggttctggcttttcggatacgttgatg
caggaggtgacccagcatctgcacgggggcggcaagcggcctaccgcgcatatccccacc
gaggacaccgatctgcgtggcgccacctggttcgcgccgcggttcgtggtggaggtgttc
tatcgcggtgtcggggggcagcagctgttgcgccaggcctcgctcaaggcggtgcgtctg
gacaaggacatcgccgacctggccgacagcgataccggggatgtcagtcccgcgcaggcc
gacgtggctaacacgcccgcgcgcgggcgcaagcgtgcaaacaagcaagcgcccgcgcag
ggcgagcccacgttgtccagcccgaccaagctgatctacccggacatccgtgccaccaag
ggcgatgtctgggagtactaccacgcggtgatggatcacctgctgccagagatcgtgggg
cggccgttgtcgatcatccgttgccccaacggtgcggaaaaaccgtgctttttccagaag
catcacaccgccgggctggagcgggtgagctcggtgcggttgaaggaagaaaccggcagc
aatgcccactatctggtggtcgaggatgcgcccggactgctggaactggtgcagttcaat
gcgctggaattccacccctggggctcgcatgcggcgcgaccggatatggctgaccgcgtg
gtgttcgatctggatccgggcccggatgtgccatttgccgaggtcaaacgggccgccacc
gatatccgcaagctgttggcgcagctggagctggaatcgtttctgcgcgtgtccggtggc
aagggcctgcacgtggtggtgcccttgaaccccggctgcgattgggagctgaccaagcgc
tttgccaaaggctttgccgacgcgttggcgcaatccgagccggaccgcttcgtagccacg
gcaaccaagcgcttccgcaacaaacgcatttttgtcgattacctgcgcaacgggcgcggg
gccaccgcagtggcgtcgtactcgctgcgcggccgcccgggcgcaccggtggcactgccg
ctgccgtggtcagacctggccaagctgcatcgcgccaacgccttcaccctgcgcgatgtg
ccagacaagttgcgtcgccgccgcaaggacccctgggcagacatcgcgcagattcaacag
aacctggcgcgctgggcggaccagggctga
DBGET
integrated database retrieval system
