Xanthomonas campestris pv. vesicatoria: XCV1921
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Entry
XCV1921 CDS
T00288
Symbol
rpfB
Name
(GenBank) long-chain-fatty-acid-CoA-ligase RpfB
KO
K01897
long-chain acyl-CoA synthetase [EC:
6.2.1.3
]
Organism
xcv
Xanthomonas campestris pv. vesicatoria
Pathway
xcv00061
Fatty acid biosynthesis
xcv00071
Fatty acid degradation
xcv01100
Metabolic pathways
xcv01212
Fatty acid metabolism
xcv02024
Quorum sensing
Module
xcv_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
xcv00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
XCV1921 (rpfB)
00071 Fatty acid degradation
XCV1921 (rpfB)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
XCV1921 (rpfB)
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
xcv01004
]
XCV1921 (rpfB)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
xcv04147
]
XCV1921 (rpfB)
Enzymes [BR:
xcv01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
XCV1921 (rpfB)
Lipid biosynthesis proteins [BR:
xcv01004
]
Acyl-CoA synthetase
Long/very long chain acyl-CoA synthetase
XCV1921 (rpfB)
Exosome [BR:
xcv04147
]
Exosomal proteins
Exosomal proteins of breast milk
XCV1921 (rpfB)
Exosomal proteins of breast cancer cells
XCV1921 (rpfB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
AMP-binding_C_2
Motif
Other DBs
NCBI-ProteinID:
CAJ23598
UniProt:
Q3BUB1
LinkDB
All DBs
Position
complement(2172007..2173689)
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AA seq
560 aa
AA seq
DB search
MNQARPWLQSYPAGVAAEIDLEQFRTVAEVFATSVKRFADRPAYHSFGKTITYREADQLV
EQFAAYLLGELQLKKGDRVALMMPNCLQYPIATFGVLRAGLTVVNVNPLYTPRELKHQLI
DSGASVLVVIDNFGTTVQQVIADTPVRQVITTGLGDMLGFPKAALLNFVVKYVKKLVPDY
RINGAIRFREALALGRKHRVPTLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQA
HQWLAGTGKLEEGHEVVITALPLYHIFALTTNGLVFMKIGGCNHLISNPRDMPGFVKELK
KTRFTAFTGVNTLFNGLLNTPGFDQVDFSSLKMTLGGGMAVQRSVAERWKKVTGLTLVEA
YGLTETSPAACINPMDLKDYNGSIGLPIPSTDACIKDDAGAELPVGEIGELCIRGPQVMK
GYWKKPDETAKVMDAQGWLHTGDIARMDAQGFVYIVDRKKDMILVSGFNVYPNEIEDVIA
EMPGVLEVAAVGVPDDKSGEIVKAVIVKKDPALTADDVKAHCRANLTGYKQPRVIEFRKE
LPKTNVGKILRRELRDAPKT
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atgaatcaggcacgtccttggttgcaaagttatccggccggcgttgccgccgaaatcgat
cttgagcagttccgcacggtggccgaggtgtttgccacctccgtgaaacgcttcgccgac
cggcctgcgtaccatagcttcggcaagaccatcacctaccgcgaggcggatcagctggtc
gagcaattcgccgcctacctgcttggcgagctgcagttgaagaaaggcgaccgcgtcgcc
ttgatgatgcccaactgcctgcaataccccatcgcgaccttcggcgtgctgcgtgccggc
ctgaccgtggtcaacgtcaatccgctgtacaccccgcgcgaactcaagcatcagttgatc
gactccggcgccagcgtgctggtggtcatcgacaacttcggcaccaccgtgcagcaggtc
atcgccgacacgccggtcaggcaagtcatcaccaccggcctgggcgacatgctgggcttc
ccgaaggcggcactgctcaacttcgtggtcaagtacgtcaagaagctggtgcccgattac
cgcatcaacggcgcgattcgcttccgcgaggcgctggcgctgggccgcaagcaccgcgtg
ccgacgctgcagatcgaacccgacgacatcgctttcctgcagtacaccggcggcaccacc
ggcgtggccaagggcgcaatgctgacccaccgcaatctggtcgccaacatgcagcaggcg
caccagtggctggcgggtaccggcaagctggaagaaggccacgaagtggtgatcaccgcg
ctgccgctgtaccacatcttcgcattgaccacgaacggcctggtcttcatgaagatcggc
ggctgcaaccacctgatcagcaacccgcgcgacatgccaggcttcgtcaaggagctgaaa
aagacccgcttcaccgcgttcaccggcgtcaacacgctgttcaacgggctgctcaatacg
cccggattcgatcaggtggatttctcctcgctcaagatgacccttggcggcggcatggcc
gtccagcgttcggtcgccgagcgttggaagaaagtcaccggcctgaccctggtcgaagcc
tacggcctgactgaaacctcgccggccgcgtgcatcaacccgatggacctgaaggactac
aacggttcgatcggcctgccgattccgtccaccgatgcctgcatcaaggacgacgccggc
gcggaactgcccgtgggcgagatcggcgagctgtgcatcaggggcccgcaggtcatgaag
ggctactggaagaaacccgatgaaaccgccaaggtcatggatgcccaaggctggctgcat
accggcgacatcgcgcgcatggacgcacagggcttcgtctacatcgtcgatcgcaagaag
gacatgatcctggtgtccggcttcaacgtgtaccccaacgagatcgaggacgtgatcgcc
gaaatgcccggcgtgctggaagtggccgccgtgggcgtgccggatgacaagtccggcgag
atcgtcaaggcggtcatcgtgaagaaggacccggccctgacggccgatgatgtgaaggcg
cattgccgcgctaacctcaccggctacaagcagccgcgggtgatcgaattccgcaaggag
ttgcccaagaccaacgtcggcaagatcctgcgccgcgaattacgggacgcgccgaagacg
taa
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