KEGG   Xenorhabdus doucetiae: XDD1_0467Help
Entry
XDD1_0467         CDS       T03784                                 

Gene name
dacB
Definition
(GenBank) D-alanyl-D-alanine carboxypeptidase dacB
  KO
K07259  serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
Organism
xdo  Xenorhabdus doucetiae
Pathway
xdo00550  Peptidoglycan biosynthesis
Brite
KEGG Orthology (KO) [BR:xdo00001]
 09100 Metabolism
  09107 Glycan biosynthesis and metabolism
   00550 Peptidoglycan biosynthesis
    XDD1_0467 (dacB)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01002 Peptidases [BR:xdo01002]
    XDD1_0467 (dacB)
   01011 Peptidoglycan biosynthesis and degradation proteins [BR:xdo01011]
    XDD1_0467 (dacB)
Enzymes [BR:xdo01000]
 3. Hydrolases
  3.4  Acting on peptide bonds (peptidases)
   3.4.16  Serine-type carboxypeptidases
    3.4.16.4  serine-type D-Ala-D-Ala carboxypeptidase
     XDD1_0467 (dacB)
   3.4.21  Serine endopeptidases
    3.4.21.-  
     XDD1_0467 (dacB)
Peptidases [BR:xdo01002]
 Serine Peptidases
  Family S13: D-Ala-D-Ala peptidase C family
   XDD1_0467 (dacB)
Peptidoglycan biosynthesis and degradation proteins [BR:xdo01011]
 Peptidoglycan biosynthesis and degradation
  DD-Carboxypeptidase/DD-Endopeptidase (Low molecular weight PBP)
   XDD1_0467 (dacB)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: Peptidase_S13 Beta-lactamase2 Transpeptidase
Motif
Other DBs
NCBI-ProteinID: CDG16170
UniProt: A0A068QQR5
LinkDB All DBs
Position
complement(439650..441074)
Genome map
AA seq 474 aa AA seqDB search
MLSLILSIFSANASSNVSSIEKSAQYLPAGTDFSFIAQVVGSKNPLVDYHGQQMALPAST
QKIVAALAALLQLGKDYRFITTLESDANIVDGVLEGNLTARFVGDPMLTRSQLRNMVETL
KQSGIKQIAGDLVIDVSIFASHDKAPGWVWNDMTQCFSAPPSAAIVDKNCFSVSLYSSEQ
PGELAVVRVPSFYPVDVLSEVKTLAKGSPEAKYCELDVTSADLNRYTLTGCLTQRNEPLP
LAFAIQNGASYVGKILKNELNTAGIELKGHIRRQSIPQPPEKIRAVNQSVPLMNMLTIML
KKSDNMIADTLFRTLGHRYFNVPGTWRAGSDAVRQILKQKAGIDLGNTVMVDGSGLSRHN
LIAPATMMEILQFIAQHNDELDFISMLPKAGYDGTLAYRPGLHEAGLDGKVFAKTGSLQG
VYNLAGFMTAASGQQIAFVQFVSAYSVPPQDQRSRRVPLSRFEHDLYKSLYQNH
NT seq 1425 nt NT seq  +upstreamnt  +downstreamnt
atgctcagtttgattctgagtattttcagtgcgaatgcctcttccaatgtctcttcgatt
gagaaaagtgcccaatatttgcctgcgggaactgatttttcgtttattgcccaagttgtt
ggctcaaaaaatcccttagttgattatcacgggcaacaaatggcgttaccggcaagtacg
cagaaaatcgtggcagcattggcagcgctattgcagcttggtaaggattaccgttttata
acaaccttggaaagtgatgccaatattgtagatggcgtattagaaggtaatctaacggct
cgctttgtcggcgatcccatgctgacacgttcacaactgcgcaatatggtcgagacctta
aaacaatcgggtatcaaacagattgccggcgaccttgtgatcgatgtttcgattttcgcc
agccatgataaagcccctggctgggtatggaacgatatgacccagtgtttcagtgcccct
ccatcagccgccatcgtggataagaactgcttttctgtgtcactttacagctcagaacaa
cctggagaactggctgttgttcgtgtgccctctttttatcctgtcgacgtattgagtgaa
gtcaaaacattggcgaagggatcgcccgaagcgaagtattgtgaacttgatgtgacatcg
gctgacctgaatcgatataccctgacaggttgcctgacacaacgcaatgaaccactcccc
ttggcgtttgccatccaaaatggggcgagttatgttggcaagatcctaaaaaatgaactg
aatactgcgggcatcgagctaaaaggccatatacggcgccaatctattccccaaccacca
gaaaagatccgcgccgtcaatcaatctgtaccattaatgaatatgctcacaatcatgttg
aaaaaatcagataacatgattgccgatactctctttcgtaccctcggccatcgttatttc
aacgttccgggtacatggcgggcaggttccgatgccgttcgccagattctgaaacagaaa
gccggtattgacttaggtaataccgtcatggtggatggttctggcctttcacgccacaat
ttgatcgcccccgcaaccatgatggagatattgcaatttatcgcccagcataatgatgaa
ctggacttcatctcgatgttacccaaagcgggatatgatggcacgttggcttatcgtccc
ggtctgcatgaagcggggcttgatggtaaagtttttgccaaaacaggatcattacaaggc
gtttataacctggcaggatttatgactgccgccagtgggcaacaaattgcttttgtccag
tttgtctctgcctactctgttccgccgcaagatcagcgtagccgccgggttccgttatcg
cgttttgaacacgatttgtataagtcgttatatcaaaaccactaa

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