Xenorhabdus hominickii: A9255_13840
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Entry
A9255_13840 CDS
T04538
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
xho
Xenorhabdus hominickii
Pathway
xho03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xho00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A9255_13840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xho03019
]
A9255_13840
03016 Transfer RNA biogenesis [BR:
xho03016
]
A9255_13840
Enzymes [BR:
xho01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
A9255_13840
Messenger RNA biogenesis [BR:
xho03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
A9255_13840
Transfer RNA biogenesis [BR:
xho03016
]
Prokaryotic type
tRNA degradation factors
A9255_13840
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
HTH_12
S1
Dimerisation
LexA_DNA_bind
OB_Dis3
RNase_II_C_S1
HTH_11
Rho_RNA_bind
Motif
Other DBs
NCBI-ProteinID:
AOM41559
UniProt:
A0A2G0QE66
LinkDB
All DBs
Position
complement(3022147..3024579)
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AA seq
810 aa
AA seq
DB search
MSKDPFQEREAEKYESPIPSREYILDIISKHTTPVSRQELAQELQLTSAEALEALRRRLR
AMERDGQLVFTRRQCYALPERLDLLKGTVIGHRDGYGFLRVEGHKEDFYLAAEQMKMAIH
GDVVLAQPLRPDRKGRIEVRIVRVLEPKSSQIVGRYFMDAGMGFVVPDDSRLCFDILIPK
EEVCGARMGNVVVVELTNHPTRRTKAIGKIVEVLGETMGTNMAVEIALRTHEIPHSWPPM
VEKQVVDLDEQVPESAKQGRVDLRELPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA
DVSYYVRPQTPLDTEARSRGNSVYFPSQVVPMLPEILSNGLCSLNPEVDRLCMVCEMTIS
AQGKLSSYKFYEAVMNSHARLTYTKVWKILQGDQEWRDHYKPLVKHIEHLHELYQALEQA
REERGAISFESEEAKFIFNAERRIERIEPVVRNDAHKLIEECMILANIAAARFVEKHNEP
ALYRIHDRPREESILNLRSVFNELGLTLLGGMQPEPKDYAQLMKDVADRPDHELLQTMLL
RSMKQAIYEPENRGHFGLALRAYSHFTSPIRRYPDLALHRAIKYLLAQEKGIVEDRWTPT
GGWHNDMEHMLQLGDHCSLTERRADEATRDVADWLKCDFMQDQVGNVFTGVITSVTGFGF
FVRLNDLFIDGLVHVSTLDNDYYRYDNVGQRLIGESSGQTYRLGDEVEIRVEAVHMDERK
IDFALLSTTRKARNPGKTVRDKVKKGTSERKKDKKGRDNKKSANFESDSSFRKKKSAENP
KSPKPSKKKKPSDKTKRIAEKLKAKRAKKA
NT seq
2433 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaagatccttttcaggaacgagaggctgaaaaatacgaatctcctatcccaagc
cgtgaatacatcttggatatcatttctaaacacaccactccggtaagccgtcaggaatta
gcacaagaacttcagttaaccagcgcagaagcgttggaagcattgcgccgccgtttgcgg
gcaatggaacgtgatggacagttggtttttacccgtcgtcaatgttatgcgttaccagaa
cgactggatttgttgaaaggcacggtgattggacatcgtgatggctatggtttcctgcgt
gtagaaggtcataaagaagatttttatctggccgcagaacagatgaaaatggcaatccac
ggtgatgttgtactggcacaacctttgcggccagacagaaaaggccgcattgaagtgcgg
atagtgagagtattagagccaaagagcagccaaattgttggccgctattttatggatgca
ggcatgggatttgtcgtccccgatgatagtcgcctgtgcttcgatattttgatccccaaa
gaagaagtttgcggagcgagaatgggcaatgttgtggtggttgagctaacgaatcacccg
acacgccgaactaaagctatcggaaaaattgttgaagtattgggcgaaaccatgggaacg
aacatggcggttgaaattgcgcttcgtactcatgaaattccccatagctggccgccaatg
gtagaaaaacaggtggttgatttggatgaacaagtgccggaatctgccaagcaaggtcgc
gttgatttgcgtgaattaccgctggtgacgatcgacggcgaagatgcccgtgactttgat
gatgccgtatattgtgagaaaaaacgtggcggcggttggcgtttgtgggtagcgatcgcc
gatgtcagctactatgtacgtccgcaaacaccgttggatacggaagcgcgcagccgtggt
aactcggtctattttccatcccaagtcgtaccgatgctgccggaaattctgtcgaatgga
ttgtgttccctcaatccagaagttgatcgcctgtgtatggtatgtgaaatgaccatttct
gcacaaggaaagctatcttcctataagttttacgaagcagttatgaattctcatgcgcgt
ttgacctatacgaaagtttggaagatcttgcagggagatcaagaatggcgtgatcactac
aagccgttggtcaagcatattgagcatttgcatgaactttatcaggcattggaacaagcg
cgcgaagagcggggcgcaatttcgtttgagtctgaagaagccaaatttatctttaatgca
gaacgtcgcattgagagaattgagccagttgtacgtaacgatgcccataagcttattgaa
gagtgcatgatattggcgaatattgcggcagctcgctttgttgagaagcacaatgaacct
gcgttatatcgtattcatgatcgtccgagagaagaaagtattctgaacctgcgttcggtc
ttcaatgagttggggctgactctattgggaggaatgcagccagaaccgaaagattatgcg
caattgatgaaagacgtcgcggatcgaccggatcatgaattattgcaaaccatgttattg
cgttccatgaaacaggcaatctatgagccggaaaatcggggacactttggtttggcacta
cgtgcatactctcactttacttcgccaattcgccgctatcccgatttggcactgcatcgg
gcgatcaaatatttattggcgcaagagaagggtattgttgaggatcgttggactccaaca
ggaggttggcacaacgacatggagcacatgttgcaattaggcgaccactgttccttgact
gagcgtcgggccgatgaagcgacaagggatgtagctgattggctgaaatgtgattttatg
caagatcaggtgggcaacgttttcactggggtgatcactagcgtgacaggctttggcttt
tttgtccgcctgaatgacctgttcattgacggtttggtacatgtatcgacgctggataat
gattattacagatatgataatgttggtcagcgtctgattggtgaatcttctgggcagact
tatcgcttgggagatgaggtagagatccgtgtggaagcggttcacatggatgagcgtaaa
attgatttcgctttgctttcaacaacacgtaaagcgcgtaatccgggtaagactgtgcgt
gataaagtgaaaaaaggcacttcagagcgtaaaaaggacaaaaaaggccgtgataataaa
aaatcagccaattttgagtcagacagctccttccgtaaaaagaaaagtgcggaaaatccg
aaatcacctaaacccagtaagaagaaaaaaccgtcagacaaaaccaaaagaattgcggaa
aaactgaaagcaaaacgcgcgaaaaaagcgtga
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