KEGG   Candidatus Xiphinematobacter sp. Idaho Grape: AMD24_00347
Entry
AMD24_00347       CDS       T04108                                 
Symbol
spoVD_1
Name
(GenBank) Stage V sporulation protein D
  KO
K03587  cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
Organism
xii  Candidatus Xiphinematobacter sp. Idaho Grape
Pathway
xii00550  Peptidoglycan biosynthesis
xii01100  Metabolic pathways
xii01501  beta-Lactam resistance
Brite
KEGG Orthology (KO) [BR:xii00001]
 09100 Metabolism
  09107 Glycan biosynthesis and metabolism
   00550 Peptidoglycan biosynthesis
    AMD24_00347 (spoVD_1)
 09160 Human Diseases
  09175 Drug resistance: antimicrobial
   01501 beta-Lactam resistance
    AMD24_00347 (spoVD_1)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01011 Peptidoglycan biosynthesis and degradation proteins [BR:xii01011]
    AMD24_00347 (spoVD_1)
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:xii03036]
    AMD24_00347 (spoVD_1)
Enzymes [BR:xii01000]
 3. Hydrolases
  3.4  Acting on peptide bonds (peptidases)
   3.4.16  Serine-type carboxypeptidases
    3.4.16.4  serine-type D-Ala-D-Ala carboxypeptidase
     AMD24_00347 (spoVD_1)
Peptidoglycan biosynthesis and degradation proteins [BR:xii01011]
 Peptidoglycan biosynthesis and degradation
  DD-Transpeptidase (Class B PBP)
   AMD24_00347 (spoVD_1)
Chromosome and associated proteins [BR:xii03036]
 Prokaryotic type
  Chromosome partitioning proteins
   Divisome proteins
    AMD24_00347 (spoVD_1)
SSDB
Motif
Pfam: Transpeptidase PBP_dimer Acetyltransf_11
Other DBs
NCBI-ProteinID: ALJ56528
UniProt: A0A0P0FQV0
LinkDB
Position
367801..369540
AA seq 579 aa
MTWAGVGLSLILTGYSAQLVYIQIAKHHEFTALAAQKHSIRQILHARRGLILDANKEILA
ANLPLKTVVADGSLIKDANALARCAAPFLAIPIEELLSKLKTERKYVVIKRKFPEDQARA
LMKELRKTSLRGLSFEQELQRIYPNGELLSQVLGFLDHSGRGVQGLESSMAAYLDGKNGF
RLIERDRAGREIVIYRGQEYPARNGINVQLTIDMNLQAIMEKEVDAAYHELKAAYISSIM
IRPQTGEILAMTNRPTFDPNNVGASGPNQLRNYAVMDMIEPGSTFKIVTTSGVLNERLLR
PENTIFCENGEFHYGGTVLKDHKAYEYLSVHDTLVKSSNIGAAKLAFLLGNQRLYKYIRK
FGFGDRTGVELPSEGSGIIHQPHHWSKISITRVPIGYEVAVTPLQLTVAMSAIANGGKLM
APHIVKALLDEKGKPLSTISPHFVRQVISPEAAKAVRDALTEVVSQKGTAVQARVDGFEV
AGKTGTAQKVDYNGGYHKGRYVASFAGFLPREDPQFVCLVVVDDARVSPSMAYGGLISAP
IFSRIAERTARYMDLPHSSSKTALFTAFPKEACKLNSVR
NT seq 1740 nt   +upstreamnt  +downstreamnt
atgacttgggcaggagttgggctttccttaattctcactggatactctgcccagctagtc
tacattcagattgccaagcaccacgagtttacggctttagctgcacagaaacattccatt
cgccaaattctccatgctcgtcgtggacttattctcgatgccaacaaggagattctggct
gccaatctcccgttgaaaacggttgtggcagacggctccttaatcaaggatgcaaatgcg
ctggcaaggtgtgccgctccttttcttgcgattcctattgaagaactgctctcaaagctt
aaaacggaacgtaagtatgtggtaatcaagagaaaatttcccgaggatcaagctagggca
ttaatgaaggaattacgaaagacttcactacgtggtctgtcttttgagcaagagttacag
cgcatctaccctaatggcgagctgctttcccaagtgctgggatttttggatcatagtgga
cgaggcgtacaaggcttggagtcttctatggcagcctacctagacggtaaaaacgggttt
cgcctcattgaacgtgaccgtgccggacgagaaattgtgatttaccgtgggcaggaatat
ccagcccgcaacggaattaatgtccaactcactattgatatgaacctacaggccattatg
gaaaaggaggtagatgccgcttatcacgagcttaaagcggcatacatcagctccatcatg
atacgccctcaaactggtgagatcttggctatgaccaatcgtcccacgtttgatcctaat
aacgtaggagcttctggtcccaatcagctaaggaactacgctgttatggatatgatagag
ccaggatccacctttaagatcgtcactacctctggagtgctgaacgaaagactattacgt
ccggaaaataccattttttgcgagaacggcgaattccactacggcgggaccgtcctcaag
gaccataaagcctacgagtatctttctgtacacgacactttagtcaagtcttccaatatt
ggtgcagccaagctagcgtttttattgggtaatcagcgcctgtacaaatacattcgaaaa
ttcgggttcggagatagaacaggcgttgagttacctagcgaaggtagtggaattatccac
cagccgcatcattggagtaagataagcattacccgagtccctatagggtacgaggtggct
gtcactccccttcagctcactgttgccatgagtgctattgccaatggaggaaaacttatg
gctccgcacattgtaaaggcacttcttgatgaaaaaggaaaaccacttagtaccatctcg
cctcactttgttcgacaagtaatctctccggaggcggctaaagcagtacgggatgcgcta
acagaagtcgtgagccagaagggaactgcggtgcaagcacgcgtcgatggatttgaagta
gctgggaaaacgggaactgctcaaaaggtggattacaatggaggataccacaagggacgc
tacgtcgcttccttcgctggcttcctccccagggaggatccgcaatttgtttgcttagtc
gtagtggatgacgccagagtgtcccccagcatggcttacggggggttgatatccgctcca
atcttttcccgcatcgcagaaagaacggcccgttatatggatttacctcactcctcatca
aagactgccttattcaccgcctttccaaaagaggcatgtaagcttaactcagtacgatga

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