Candidatus Xiphinematobacter sp. Idaho Grape: AMD24_00347
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Entry
AMD24_00347 CDS
T04108
Symbol
spoVD_1
Name
(GenBank) Stage V sporulation protein D
KO
K03587
cell division protein FtsI (penicillin-binding protein 3) [EC:
3.4.16.4
]
Organism
xii
Candidatus Xiphinematobacter sp. Idaho Grape
Pathway
xii00550
Peptidoglycan biosynthesis
xii01100
Metabolic pathways
xii01501
beta-Lactam resistance
Brite
KEGG Orthology (KO) [BR:
xii00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
AMD24_00347 (spoVD_1)
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
AMD24_00347 (spoVD_1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
xii01011
]
AMD24_00347 (spoVD_1)
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
xii03036
]
AMD24_00347 (spoVD_1)
Enzymes [BR:
xii01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
AMD24_00347 (spoVD_1)
Peptidoglycan biosynthesis and degradation proteins [BR:
xii01011
]
Peptidoglycan biosynthesis and degradation
DD-Transpeptidase (Class B PBP)
AMD24_00347 (spoVD_1)
Chromosome and associated proteins [BR:
xii03036
]
Prokaryotic type
Chromosome partitioning proteins
Divisome proteins
AMD24_00347 (spoVD_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Transpeptidase
PBP_dimer
Acetyltransf_11
Motif
Other DBs
NCBI-ProteinID:
ALJ56528
UniProt:
A0A0P0FQV0
LinkDB
All DBs
Position
367801..369540
Genome browser
AA seq
579 aa
AA seq
DB search
MTWAGVGLSLILTGYSAQLVYIQIAKHHEFTALAAQKHSIRQILHARRGLILDANKEILA
ANLPLKTVVADGSLIKDANALARCAAPFLAIPIEELLSKLKTERKYVVIKRKFPEDQARA
LMKELRKTSLRGLSFEQELQRIYPNGELLSQVLGFLDHSGRGVQGLESSMAAYLDGKNGF
RLIERDRAGREIVIYRGQEYPARNGINVQLTIDMNLQAIMEKEVDAAYHELKAAYISSIM
IRPQTGEILAMTNRPTFDPNNVGASGPNQLRNYAVMDMIEPGSTFKIVTTSGVLNERLLR
PENTIFCENGEFHYGGTVLKDHKAYEYLSVHDTLVKSSNIGAAKLAFLLGNQRLYKYIRK
FGFGDRTGVELPSEGSGIIHQPHHWSKISITRVPIGYEVAVTPLQLTVAMSAIANGGKLM
APHIVKALLDEKGKPLSTISPHFVRQVISPEAAKAVRDALTEVVSQKGTAVQARVDGFEV
AGKTGTAQKVDYNGGYHKGRYVASFAGFLPREDPQFVCLVVVDDARVSPSMAYGGLISAP
IFSRIAERTARYMDLPHSSSKTALFTAFPKEACKLNSVR
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
atgacttgggcaggagttgggctttccttaattctcactggatactctgcccagctagtc
tacattcagattgccaagcaccacgagtttacggctttagctgcacagaaacattccatt
cgccaaattctccatgctcgtcgtggacttattctcgatgccaacaaggagattctggct
gccaatctcccgttgaaaacggttgtggcagacggctccttaatcaaggatgcaaatgcg
ctggcaaggtgtgccgctccttttcttgcgattcctattgaagaactgctctcaaagctt
aaaacggaacgtaagtatgtggtaatcaagagaaaatttcccgaggatcaagctagggca
ttaatgaaggaattacgaaagacttcactacgtggtctgtcttttgagcaagagttacag
cgcatctaccctaatggcgagctgctttcccaagtgctgggatttttggatcatagtgga
cgaggcgtacaaggcttggagtcttctatggcagcctacctagacggtaaaaacgggttt
cgcctcattgaacgtgaccgtgccggacgagaaattgtgatttaccgtgggcaggaatat
ccagcccgcaacggaattaatgtccaactcactattgatatgaacctacaggccattatg
gaaaaggaggtagatgccgcttatcacgagcttaaagcggcatacatcagctccatcatg
atacgccctcaaactggtgagatcttggctatgaccaatcgtcccacgtttgatcctaat
aacgtaggagcttctggtcccaatcagctaaggaactacgctgttatggatatgatagag
ccaggatccacctttaagatcgtcactacctctggagtgctgaacgaaagactattacgt
ccggaaaataccattttttgcgagaacggcgaattccactacggcgggaccgtcctcaag
gaccataaagcctacgagtatctttctgtacacgacactttagtcaagtcttccaatatt
ggtgcagccaagctagcgtttttattgggtaatcagcgcctgtacaaatacattcgaaaa
ttcgggttcggagatagaacaggcgttgagttacctagcgaaggtagtggaattatccac
cagccgcatcattggagtaagataagcattacccgagtccctatagggtacgaggtggct
gtcactccccttcagctcactgttgccatgagtgctattgccaatggaggaaaacttatg
gctccgcacattgtaaaggcacttcttgatgaaaaaggaaaaccacttagtaccatctcg
cctcactttgttcgacaagtaatctctccggaggcggctaaagcagtacgggatgcgcta
acagaagtcgtgagccagaagggaactgcggtgcaagcacgcgtcgatggatttgaagta
gctgggaaaacgggaactgctcaaaaggtggattacaatggaggataccacaagggacgc
tacgtcgcttccttcgctggcttcctccccagggaggatccgcaatttgtttgcttagtc
gtagtggatgacgccagagtgtcccccagcatggcttacggggggttgatatccgctcca
atcttttcccgcatcgcagaaagaacggcccgttatatggatttacctcactcctcatca
aagactgccttattcaccgcctttccaaaagaggcatgtaagcttaactcagtacgatga
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