Xenopus laevis (African clawed frog): 108700333
Entry
108700333 CDS
T01010
Gene name
setdb1.S
Definition
(RefSeq) SET domain, bifurcated 1 S homeolog
KO
K11421
histone-lysine N-methyltransferase SETDB1 [EC:
2.1.1.43
]
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla00310
Lysine degradation
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09100 Metabolism
09105 Amino acid metabolism
00310 Lysine degradation
108700333 (setdb1.S)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
xla03036
]
108700333 (setdb1.S)
Enzymes [BR:
xla01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.43 histone-lysine N-methyltransferase
108700333 (setdb1.S)
Chromosome and associated proteins [BR:
xla03036
]
Eukaryotic Type
Histone modification proteins
HMTs (histone methyltransferases)
HKMTs (histone lysine methyltransferases)
108700333 (setdb1.S)
Heterochromatin formation proteins
Other heterochromatin formation proteins
108700333 (setdb1.S)
SSDB
Motif
Pfam:
DUF5604
SET
Tudor_4
TUDOR_5
Pre-SET
MBD
DUF4573
DUF4537
Other DBs
NCBI-GeneID:
108700333
NCBI-ProteinID:
XP_018088918
Xenbase:
XB-GENE-17337298
LinkDB
Position
8S
AA seq
1297 aa
MRSPMLEMESQEKMESQETMELEQVVVKELGISMDDLRELIDKELEKMEVVKQKKAQLLE
LEQLVKQKEAEVEHVDKLFDNATKAVDDCEALVKSLYDQIGMTYKESSSEDEGASKPVEV
IEIPDEDDDDDVMSVGSGEAVSKIPKEKHLLREAMAAMKRSRQDVQSIVEAIQKKSDGPQ
TKFSSHPSSTTSSVGGSNQAGASNDMSKDGDLVVGMRILGKKRTKTWHKGTLISIQCVGP
GKKYKVKFDNKGKSLLSGNHIAYDYHPPPENLTVGSRVVAKYKDGNQVWLYAGIVAEPPS
NKNKMRYLIFFDDGYASYVTHPELYPVCRPLINSWEDIEDVSCRDFIQEYVNAYPNRPMV
LLKSSQLIKTEWEGTWWKSKVEEVDGSLVKILFLDDKRCEWIYRGSTRLEPMFSMKTSTA
STQEKKQAGQQRTRPNVGAIRSKGPVVQYTHDLTGNEPEHKPAAPPSPHSIPSPQLIDTD
SDSQQAQSKKQVAKKSTSFRPGSAGSGQSSPIPTESVPPPPAAPRPFQPTQSNQSNQSAQ
PVQSIQPIHNIQTIQTIQGIQTIQSIQPIQTIQTLQPIQTIQPLQTIQTLQGNRIVTSIQ
QFHIIHTENIPAETTYKAPKEKLFYLPHVCNYTCLSRIRPISHRSKNPLIVPLLYDFRRM
TARRRVNRKMGFHVLYKTPCGLSLRTMPEIERYLFETECKMLFLEMFCLDPYVLVDRKFQ
PQKPYYYIPDITYGKEDVPLSCVNEIDRTPPPQVAYSKERIPGKGVFINTGADYLVGCDC
TDGCRDKSKCACHQLTIQATGCTPGAQMNSMAGYQHKRLEECLPTGVYECNKRCKCSANM
CNNRLVQHGLQVRLQLFKTQNKGWGIRCLDDIAKGSFVCIYAGKILTDDFADKEGLEMGD
EYFANLDHIESVENYKEGYESDAKSSSDSSGVDLKEDNEENSGSDDQDESNDSSDDNFGK
NEDITTSSVWRSYATRRTTRGQKENGTSETASKDSALARQTSRDETNDCKLPEETSKNKV
ASWLSSNTMADSIMDSDSRSSLKMGDAPEADKPKESEEASKYPGHGEGNRMYGYNPAPAK
KDGVRRPVSKTALHQIRRQSSSAQPTDEVLTLSSSSESEVGSGTNGSKKPAAQATANDSD
DIQTISSGSDEEEEKKHVATNAGPVKRQVAVKSTRGFALKSTHGITVKTNMASGEGGVGR
RTTRQFFDGEESCYIIDAKLEGNLGRYLNHSCSPNLFVQNVFVDTHDLRFPWVAFFASKR
IRAGTELTWDYNYEVGSVEGKKLLCCCGSTECRGRLL
NT seq
3894 nt
+upstream
nt +downstream
nt
atgcgatctcctatgttagagatggagtcacaggagaagatggagtcacaggagacgatg
gagttggagcaggtggtggtgaaggagctgggcatttccatggatgatctgcgtgagctg
atagataaagagctggaaaagatggaagttgtgaaacagaagaaagctcagctattggaa
ctagagcaactggtgaagcagaaagaggcagaagtggagcatgtggacaagcttttcgac
aacgctacaaaggccgtggatgattgtgaggcgctagtgaagagtctgtacgaccagatt
ggcatgacttacaaagagagcagctctgaagatgaaggagcttcaaaaccagtggaggtt
attgagatccctgatgaagatgacgatgatgacgttatgagcgtgggatcaggtgaagcc
gtgagtaagattccaaaagagaagcatttgttacgagaagcaatggctgctatgaagaga
tcaagacaagatgtgcagagcattgtagaagcaatacaaaagaagtcagatggacctcag
acaaaattttcttctcatccctcctcaacaacaagctctgtgggtggctccaatcaggcc
ggtgcctcaaatgacatgagcaaagatggagaccttgtcgtggggatgcgtattctgggc
aagaagagaaccaagacttggcacaaaggaactctgatctctatacagtgtgtgggccct
ggaaaaaagtacaaggtcaagttcgacaacaaagggaaaagcttgttgtctggtaaccac
attgcttatgactaccacccgccacctgaaaatctgactgttggtagcagagtggtagcc
aagtataaagatggaaaccaggtgtggctctatgctgggattgtcgctgagcccccaagt
aacaagaataaaatgagatatctgatctttttcgatgatggctatgcatcctatgttacc
cacccagaactgtatcctgtctgcaggccattgatcaactcatgggaggacatcgaggac
gtatcctgtcgggattttattcaggaatacgtgaatgcttaccccaatagaccaatggtt
cttttgaagagtagccaactgattaaaacagagtgggaaggaacatggtggaaatccaag
gtggaagaagtagatgggagtctggtgaaaatacttttcctggatgacaagcgttgtgaa
tggatctaccgtggttctacacgcctggagcccatgttcagcatgaagacatccacggcc
tcaacacaagagaagaagcaagctgggcaacaaaggacgcgtcctaatgtgggtgccata
cggagcaagggtcctgtagtgcagtacacgcatgacctgactgggaatgagcctgaacac
aaacctgcagcacccccatctcctcattcaatcccatcaccccagcttattgacacagac
tctgacagtcagcaggcccagtccaagaagcaagtggccaagaaaagcacttcattccgt
cccgggtcagcgggatccggacagtcttccccaattcccaccgagtcagtgccgccacct
cctgctgctccgcgtcctttccagcccacccaatctaaccaatccaaccagtctgcacaa
cctgtccagtctattcagcccatccacaatatacagaccattcaaactattcaaggcatt
caaactatccaatcaatccagccaattcaaaccatacaaactctccagcctatccaaacc
attcaacctctccagacaatccagactctccaaggaaacaggattgtgacttctattcaa
caattccatataatacatacagaaaatattccagcagagaccacctacaaggcccccaaa
gagaagcttttctacctccctcacgtctgcaactacacttgcctctcccgtattcgcccg
atctctcacagaagcaagaaccccctaatagtgccactgctttatgacttccgtcgcatg
actgcccgacggcgggtcaaccgcaaaatgggtttccacgtcctctacaagacgccctgt
ggcctgagcttgcgtacaatgccggagatcgaacgttacctttttgagaccgagtgcaaa
atgctcttcctggaaatgttttgtctggacccctatgtcttggtggatcggaaatttcag
cctcaaaaaccctattactacatccccgatatcacatatggcaaggaagatgttccactt
tcttgcgtcaatgaaatagacaggacaccgccacctcaagtggcctacagcaaggagcgc
atccctgggaaaggagtcttcatcaacaccggtgccgattatcttgtgggatgtgactgc
acagatggctgtcgagacaaatccaaatgtgcatgtcaccagttgacgattcaagccaca
ggctgcactccaggggcccagatgaactcaatggctggataccagcacaagcgcttggaa
gaatgtcttcccactggggtgtacgagtgcaacaagagatgcaagtgcagtgctaatatg
tgcaacaaccgccttgtacaacatgggctccaggtgcgcctccaactcttcaaaacccaa
aacaagggctgggggatccggtgtttggatgatatagcaaaaggctcctttgtctgcatc
tatgcaggtaagatcctcacagatgactttgcagacaaagaaggtctggagatgggtgac
gagtactttgctaacttggaccacatagaaagtgttgagaactataaggaaggctatgag
agcgacgccaagtcttcctctgatagcagcggcgtcgacctcaaagaggacaacgaggaa
aacagcggcagcgatgatcaggacgagtccaacgacagttcagatgacaattttggcaag
aacgaggacatcacaaccagctcagtgtggcgcagttatgccacccgcagaacaacaaga
ggccagaaggagaacggaacgtcggagactgcttccaaggactctgctctggcccgacaa
accagtcgggatgagaccaatgactgcaaactacccgaggagacctccaagaacaaagtg
gcttcctggctaagttcaaacaccatggcagactctattatggactctgacagtaggtct
tccctaaagatgggagatgcaccagaagcagataaacctaaggaatcggaagaggcgagc
aaatacccagggcatggagaaggaaaccggatgtacggctacaatcccgctccagccaaa
aaagatggcgtgcgacgacccgttagcaaaaccgcattgcaccagatcaggcggcagtcg
agctcagcgcaacctaccgatgaagttctgaccctctccagcagctcagagagtgaggtg
ggaagtgggaccaacggcagcaaaaaacctgctgctcaggccacagcaaatgacagtgac
gatatccagacaatctcatctggatctgacgaggaagaggagaagaagcacgtagctact
aatgcaggacctgtaaaaagacaagtggctgtaaaatccacccgaggctttgccttaaaa
tccacccacgggatcactgtgaaaaccaacatggcgtcgggtgagggaggagtaggacgc
cggaccacgcgacagttcttcgatggggaggagtcctgttacattattgatgcaaaactt
gaaggcaacttgggtcgatacttgaatcatagctgcagccccaatctctttgtacagaat
gtgtttgtggatacacatgatctgcgcttcccttgggtggccttcttcgccagcaagagg
atccgcgctggtactgagctcacgtgggattataattatgaggttggcagtgtagaaggc
aagaaactcctgtgctgctgcggatccacagaatgtcgtgggcgcctcctgtaa
DBGET
integrated database retrieval system
