Xenopus laevis (African clawed frog): 379508
Help
Entry
379508 CDS
T01010
Gene name
thbs1.S, thbs, thbs-1, thbs1, tsp, tsp-1, tsp1
Definition
(RefSeq) thrombospondin 1 S homeolog
KO
K16857
thrombospondin 1
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla04115
p53 signaling pathway
xla04145
Phagosome
xla04350
TGF-beta signaling pathway
xla04510
Focal adhesion
xla04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
379508 (thbs1.S)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
379508 (thbs1.S)
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
379508 (thbs1.S)
09143 Cell growth and death
04115 p53 signaling pathway
379508 (thbs1.S)
09144 Cellular community - eukaryotes
04510 Focal adhesion
379508 (thbs1.S)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
xla04131
]
379508 (thbs1.S)
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
xla00536
]
379508 (thbs1.S)
04990 Domain-containing proteins not elsewhere classified [BR:
xla04990
]
379508 (thbs1.S)
Membrane trafficking [BR:
xla04131
]
Endocytosis
Phagocytosis
Opsonins
379508 (thbs1.S)
Glycosaminoglycan binding proteins [BR:
xla00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
379508 (thbs1.S)
Domain-containing proteins not elsewhere classified [BR:
xla04990
]
Thrombospondin domain-containing proteins
Thrombospondins
379508 (thbs1.S)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TSP_1
VWC
TSP1_spondin
TSP1_CCN
Laminin_G_3
TSP1_ADAMTS
Laminin_G_2
Amnionless
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
379508
NCBI-ProteinID:
NP_001079818
Xenbase:
XB-GENE-865586
UniProt:
Q7SY84
LinkDB
All DBs
Position
8L
AA seq
496 aa
AA seq
DB search
MGMMKGIFLLLMLAMPQTHQAAESGNDDNSVFDLFELTGYNRKAGSRKPEGLHLVKGPDP
SSPAYRIENADLIPPLPEDKFQDLLDAIRADRGFILLATLRQAKKSRGALISVERKDGGG
HIFSLISNGQAGTLDLSLSGERKQQVVSVEDAALADGKWKNITLFVQEDRAQLYIGCDKM
ENAELDVPIQKIFTENLASIARLRVAKGGVKDNFQGVLQNVRFVFGTTLEAILRNKGCPS
MTNSVITLDNAVNGSSPAIRTNYVGHKTKDLHAVCGISCNQLSELFAEMKGLQTLVKSLQ
DQVTKETEINELISKRITMMPGACLHNGVLHKNRDEWTVDSCTECTCQNSATICRKVSCP
LMPCTNATIPDGECCPRCWPSDSADDDWSPWSDWTPCSVTCGHGIQQRGRSCDSLNNPCE
GSSVQTRSCHIQECDKRFKQDGGWSHWSPWSSCSVTCGSGQITRIRLCNSPVPQLNGKPC
EEKERQEGTRRYWRRR
NT seq
1491 nt
NT seq
+upstream
nt +downstream
nt
atggggatgatgaagggaattttcctactgttgatgttggccatgcctcagacacatcag
gcagcagaatctgggaatgatgataacagtgtatttgatctgtttgagttaacgggatac
aaccgcaaggctggctctcgtaagcctgaaggacttcatttagtgaagggacctgaccct
tccagcccagcttatagaattgaaaatgctgacttgatcccaccactgccagaagataaa
tttcaagacttgctggatgcaatacgtgctgatagagggttcatcctgttggctactctg
cgtcaagcaaagaagagtcgaggggcacttatttctgtggagagaaaagatggtggtgga
cacatcttcagtcttatctccaatggccaggctggaaccctagacttaagtttaagcgga
gaaaggaagcagcaggtggtgtctgtagaagatgctgctctggctgatggcaagtggaag
aacatcactctctttgtccaagaagaccgcgcgcaactctatataggatgtgacaagatg
gaaaatgctgagctagatgtgccaatacaaaaaattttcactgagaacctggcaagcatt
gctcgtcttcgagtagcaaagggaggagtaaaggacaactttcagggagtccttcagaac
gtgcgctttgtgtttggaaccacattagaagctattctgagaaacaaaggctgtccaagc
atgacaaactcagtcattactttggacaatgcagtgaacggctcaagcccagccatccga
acgaattacgttggccacaaaacaaaggatctgcatgctgtgtgtggcatttcctgcaat
caactgtccgaactgtttgcagaaatgaaaggcttacagactctggtgaaatctctccag
gaccaagtcaccaaagagacagagataaatgaacttatttctaagcgaataacaatgatg
ccaggtgcttgtctccacaatggagtcttgcataagaatagagatgagtggaccgttgac
agctgcactgaatgcacatgtcagaactcagcaactatatgccgaaaagtatcttgccct
ctgatgccctgcaccaatgccaccattccagatggagaatgctgtcctagatgttggcca
agtgactcagcggatgatgattggtctccatggtcagattggacaccttgctctgtgact
tgtggtcatggcatccagcagagaggacgttcctgcgacagccttaataacccctgtgaa
ggctcctctgtacagacacggtcttgccatatccaggaatgtgacaagagatttaagcaa
gatggtggttggagccattggtcaccatggtcatcatgttcagttacctgcggaagtggt
caaatcaccagaatccgtctctgcaactctcctgttcctcagctgaacggaaagccatgt
gaagagaaagaacgccaagaagggacaaggcggtactggaggcggagatga
Xenopus laevis (African clawed frog): 779026
Help
Entry
779026 CDS
T01010
Gene name
thbs2.L, thbs2, tsp2
Definition
(RefSeq) thrombospondin 2 L homeolog
KO
K16857
thrombospondin 1
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla04115
p53 signaling pathway
xla04145
Phagosome
xla04350
TGF-beta signaling pathway
xla04510
Focal adhesion
xla04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
779026 (thbs2.L)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
779026 (thbs2.L)
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
779026 (thbs2.L)
09143 Cell growth and death
04115 p53 signaling pathway
779026 (thbs2.L)
09144 Cellular community - eukaryotes
04510 Focal adhesion
779026 (thbs2.L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
xla04131
]
779026 (thbs2.L)
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
xla00536
]
779026 (thbs2.L)
04990 Domain-containing proteins not elsewhere classified [BR:
xla04990
]
779026 (thbs2.L)
Membrane trafficking [BR:
xla04131
]
Endocytosis
Phagocytosis
Opsonins
779026 (thbs2.L)
Glycosaminoglycan binding proteins [BR:
xla00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
779026 (thbs2.L)
Domain-containing proteins not elsewhere classified [BR:
xla04990
]
Thrombospondin domain-containing proteins
Thrombospondins
779026 (thbs2.L)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TSP_C
TSP_3
TSP_1
TSP1_spondin
VWC
EGF_3
cEGF
TSP1_ADAMTS
EGF_CA
Laminin_G_3
EGF
TSP1_CCN
Laminin_G_2
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
779026
NCBI-ProteinID:
XP_018088902
Xenbase:
XB-GENE-6253120
LinkDB
All DBs
Position
8S
AA seq
1176 aa
AA seq
DB search
MGMMKGIFLLLMLVMPQTHQAAESGNDDNSVFDLFELTGYNRKAGSRKPQGLHLVKGPDP
SSPAYRIEDADLIPPLPEDKFQDLLDAIRADRGFILLATLRQAKKSRGALLSVERKDGGG
HIFSLISNGRARTLDLSLSGERKQQVVSVEDAVLATGNWTNITLFVQEDRAQLYVGCNKM
ENAELDVPIQKIFTENLASTAHLRVAKGGVKDNFQGVLQNVRFVFGTTLEAILRNKGCLS
MTNSVITLDNPVNGSSPAIRTNYIGHKTKDLQAVCGFSCDDLSKLFAEMKGLRTLVTTLK
DQVTKETEKNELIAQIVTRTPGVCLHNGVLHKNRDEWTVDSCTECTCQNSATICRKVSCP
LMPCTNATIPDGECCPRCWPSDSADDDWSPWSDWTPCSVTCGHGIQQRGRSCDSLNNPCE
GSSVQTRSCQIQDCDKRFKQDGGWSHWSPWSSCSVTCGSGQITRIRLCNSPVPQLNGKQC
EGEGRENKPCQKDPCPINGQWGPWSLWDTCTVTCGGGMQKRERLCNNPKPQYEGKDCIGE
PTDSQICNKQDCPIDGCLSNPCFAGVKCTSFIDGSWKCGSCPPGYRGNGITCKDIDECKE
VPDACFTLNGVHRCENTEPGYNCLPCPPRFTGTQPFGKGIEEAKANKQVCKPRNPCADGT
HDCHKNARCIYLGHYSDPMFRCECRPGYAGNGIICGEDTDLDGWPNENLTCVDNATYHCL
KDNCPNLPNSGQEDYDKDGMGDACDKDDDNDGILDDRDNCQFVYNPAQYDYDRDDVGDRC
DNCPYNHNPDQADTDRNGEGDACSVDIDGDGILNERDNCAYVYNVDQKDTDKDGVGDQCD
NCPLEHNPEQTDSDSDLIGDKCDNNQDIDEDGHQNNLDNCPYIPNANQADHDKDGKGDAC
DHDDDNDGVPDDKDNCRLVPNPDQTDTNGDGRGDACQYDFDDDSIPDAEDVCPENVEIST
TDFRKFQMVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGFDEFSAVDFSGTFFI
NTERDDDYAGFVFGYQSSSRFYVVMWKQITQTYWDTTPTVAQGYSGLSIKVVNSTSGPGE
HLRNALWHTGNTPGQVRTLWHDPHQKGWKDFTAYRWHLTHRPKTGFIRVVMYEGKRVMAD
SGPIYDKTYAGGRLGLFVFSQEMVFFSDLKYECRDS
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atggggatgatgaagggaattttcctactgttgatgttggtcatgcctcagacacatcaa
gcagcagaatctgggaatgatgataacagtgtatttgatctgtttgagttaacgggatac
aaccgcaaggctggttctcgtaagcctcaaggacttcatttagtaaaaggacctgaccct
tcaagcccagcttacagaattgaagacgctgacttgatccctccactgccagaagataaa
ttccaagacttgctagatgcaatacgtgccgatagggggttcattctgttggctactctg
cgtcaagcaaagaagagtcgaggggcacttctgtctgtggagagaaaagacggtggtgga
cacatcttcagtcttatctccaatggtcgggctagaaccctagatttaagtttaagcgga
gaaaggaagcagcaggtggtgtctgtagaagatgctgtcttggctactggcaactggacg
aacatcactctctttgtgcaagaagaccgcgcacaactctatgtaggatgcaacaaaatg
gaaaacgctgagctagatgtgccaatacaaaaaattttcactgagaatctggcaagcaca
gctcatcttcgagtagcaaagggaggagtaaaggacaactttcagggagtccttcagaac
gtgcgctttgtgtttggaaccactttggaagctattctgagaaacaaaggctgtttaagc
atgacaaactcagtcatcactttagacaatccagtgaatggctcaagcccagccatccga
acgaattacattggccacaaaacaaaggatctgcaagctgtgtgtggcttttcctgcgat
gatctgtccaagctgtttgcagaaatgaaaggcttacggacgctagtcacaactctcaaa
gaccaagtcaccaaagagacggagaaaaatgaacttattgctcagatagtaacaaggacg
ccaggtgtttgtctccacaatggagtcttgcacaagaacagagatgagtggaccgttgac
agctgcactgaatgcacatgtcagaactcagctactatatgccgaaaggtatcttgccct
ctgatgccctgcaccaatgccactattccagatggagaatgctgtcccagatgttggcca
agcgactcagcggatgatgattggtctccatggtcagactggacaccttgctctgtgaca
tgtggtcatggcatccagcagagaggccgttcctgtgacagcttaaataacccctgtgaa
ggctcctctgtacagacacgttcttgccaaatccaggattgtgacaagagatttaagcaa
gacggtggttggagccattggtcaccatggtcatcgtgctcagttacatgcggaagtggt
caaatcaccagaatccgtctctgcaactctcctgttccacagctgaatgggaagcaatgc
gaaggcgaaggaagggagaacaaaccatgtcagaaagacccatgcccaattaacggtcag
tggggtccttggtcactgtgggacacatgcacagttacttgcggtggtggaatgcagaag
cgagaacgtctgtgcaataaccccaaacctcagtatgagggtaaagattgtattggtgag
cctactgactctcagatctgcaacaagcaggactgtcccatagatgggtgtctctctaac
ccttgctttgctggagtcaaatgcaccagcttcatcgatggatcttggaaatgtggttcc
tgcccaccagggtacagaggaaatggaatcacatgcaaagatattgatgagtgcaaagag
gtgcctgatgcctgctttactctaaatggagttcatagatgtgagaacacagagccagga
tataattgtcttccatgccctccacgtttcacaggaactcagccatttggtaaaggcatt
gaggaagctaaagccaataagcaggtttgcaagcctcgcaacccatgcgcagatggtacc
cacgactgtcacaagaacgccagatgtatctacctaggccactacagcgaccccatgttc
cgctgcgagtgcagacctggttacgccggaaatggcatcatttgcggtgaagacaccgat
ttagatggatggccaaacgagaacctcacgtgtgttgataatgctacttatcactgcttg
aaagataactgccccaacctccccaattcaggccaggaagactacgataaggatggaatg
ggagatgcctgcgataaagacgatgacaatgatggaatcctagatgacagggacaactgt
cagtttgtgtacaaccctgcacaatatgactatgatcgagatgatgtaggagaccgttgt
gataactgtccctacaaccacaacccagaccaggctgacacagatcgcaatggagaagga
gatgcctgttctgtggacattgatggagatggaattctgaacgagagagataactgcgcc
tatgtgtacaatgtagaccagaaagacacagataaggacggcgttggagaccaatgtgat
aactgcccactggaacacaatccggaacagactgactctgattctgatctcattggagac
aagtgtgacaacaaccaggatatagatgaggatgggcatcagaataacctagataactgc
ccctatatccccaatgcaaaccaggctgatcacgataaggatggcaagggtgatgcatgt
gaccatgatgatgacaatgatggtgttcctgatgataaagataactgccgattggtccct
aacccagaccagacagatactaatggtgatggccgtggagatgcttgccagtatgacttt
gatgatgacagcattcccgatgcagaagatgtttgcccagagaatgtggaaatcagcact
acggacttccgtaaattccaaatggtgcctttggatcctaaagggacatcacagattgat
cctaactgggtggtgagacatcaaggcaaagaattggtgcagactgttaactgcgatcct
ggaatagcagttggttttgacgagttcagcgctgttgacttcagtggcacatttttcatc
aacaccgagagagatgatgattatgctggctttgtgtttggataccagtccagcagcagg
ttttacgtggttatgtggaagcaaatcacacagacatactgggacacaacccctacggta
gctcagggctactctggcctctcaatcaaggttgtgaactctacctctggaccaggggag
cacctacgaaatgcactgtggcacacaggaaacactcccgggcaggttcgcaccttatgg
catgatcctcaccagaaaggctggaaagatttcacagcttacagatggcacctgacacac
agaccaaagactggtttcattagagttgtcatgtatgaaggcaagagagttatggccgac
tcaggaccaatttatgataaaacatatgctggaggaagattaggattgttcgtcttctca
caagagatggtcttcttttctgatctcaaatacgagtgcagagactcataa
DBGET
integrated database retrieval system
