KEGG   Xenopus laevis (African clawed frog): 379508
Entry
379508            CDS       T01010                                 

Gene name
thbs1.S, thbs, thbs-1, thbs1, tsp, tsp-1, tsp1
Definition
(RefSeq) thrombospondin 1 S homeolog
  KO
K16857  thrombospondin 1
Organism
xla  Xenopus laevis (African clawed frog)
Pathway
xla04115  p53 signaling pathway
xla04145  Phagosome
xla04350  TGF-beta signaling pathway
xla04510  Focal adhesion
xla04512  ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:xla00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04350 TGF-beta signaling pathway
    379508 (thbs1.S)
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    379508 (thbs1.S)
 09140 Cellular Processes
  09141 Transport and catabolism
   04145 Phagosome
    379508 (thbs1.S)
  09143 Cell growth and death
   04115 p53 signaling pathway
    379508 (thbs1.S)
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    379508 (thbs1.S)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:xla04131]
    379508 (thbs1.S)
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:xla00536]
    379508 (thbs1.S)
   04990 Domain-containing proteins not elsewhere classified [BR:xla04990]
    379508 (thbs1.S)
Membrane trafficking [BR:xla04131]
 Endocytosis
  Phagocytosis
   Opsonins
    379508 (thbs1.S)
Glycosaminoglycan binding proteins [BR:xla00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   379508 (thbs1.S)
Domain-containing proteins not elsewhere classified [BR:xla04990]
 Thrombospondin domain-containing proteins
  Thrombospondins
   379508 (thbs1.S)
SSDB
Motif
Pfam: TSP_1 VWC TSP1_spondin TSP1_CCN Laminin_G_3 TSP1_ADAMTS Laminin_G_2 Amnionless Laminin_G_1
Other DBs
NCBI-GeneID: 379508
NCBI-ProteinID: NP_001079818
Xenbase: XB-GENE-865586
UniProt: Q7SY84
LinkDB
Position
8L
AA seq 496 aa
MGMMKGIFLLLMLAMPQTHQAAESGNDDNSVFDLFELTGYNRKAGSRKPEGLHLVKGPDP
SSPAYRIENADLIPPLPEDKFQDLLDAIRADRGFILLATLRQAKKSRGALISVERKDGGG
HIFSLISNGQAGTLDLSLSGERKQQVVSVEDAALADGKWKNITLFVQEDRAQLYIGCDKM
ENAELDVPIQKIFTENLASIARLRVAKGGVKDNFQGVLQNVRFVFGTTLEAILRNKGCPS
MTNSVITLDNAVNGSSPAIRTNYVGHKTKDLHAVCGISCNQLSELFAEMKGLQTLVKSLQ
DQVTKETEINELISKRITMMPGACLHNGVLHKNRDEWTVDSCTECTCQNSATICRKVSCP
LMPCTNATIPDGECCPRCWPSDSADDDWSPWSDWTPCSVTCGHGIQQRGRSCDSLNNPCE
GSSVQTRSCHIQECDKRFKQDGGWSHWSPWSSCSVTCGSGQITRIRLCNSPVPQLNGKPC
EEKERQEGTRRYWRRR
NT seq 1491 nt   +upstreamnt  +downstreamnt
atggggatgatgaagggaattttcctactgttgatgttggccatgcctcagacacatcag
gcagcagaatctgggaatgatgataacagtgtatttgatctgtttgagttaacgggatac
aaccgcaaggctggctctcgtaagcctgaaggacttcatttagtgaagggacctgaccct
tccagcccagcttatagaattgaaaatgctgacttgatcccaccactgccagaagataaa
tttcaagacttgctggatgcaatacgtgctgatagagggttcatcctgttggctactctg
cgtcaagcaaagaagagtcgaggggcacttatttctgtggagagaaaagatggtggtgga
cacatcttcagtcttatctccaatggccaggctggaaccctagacttaagtttaagcgga
gaaaggaagcagcaggtggtgtctgtagaagatgctgctctggctgatggcaagtggaag
aacatcactctctttgtccaagaagaccgcgcgcaactctatataggatgtgacaagatg
gaaaatgctgagctagatgtgccaatacaaaaaattttcactgagaacctggcaagcatt
gctcgtcttcgagtagcaaagggaggagtaaaggacaactttcagggagtccttcagaac
gtgcgctttgtgtttggaaccacattagaagctattctgagaaacaaaggctgtccaagc
atgacaaactcagtcattactttggacaatgcagtgaacggctcaagcccagccatccga
acgaattacgttggccacaaaacaaaggatctgcatgctgtgtgtggcatttcctgcaat
caactgtccgaactgtttgcagaaatgaaaggcttacagactctggtgaaatctctccag
gaccaagtcaccaaagagacagagataaatgaacttatttctaagcgaataacaatgatg
ccaggtgcttgtctccacaatggagtcttgcataagaatagagatgagtggaccgttgac
agctgcactgaatgcacatgtcagaactcagcaactatatgccgaaaagtatcttgccct
ctgatgccctgcaccaatgccaccattccagatggagaatgctgtcctagatgttggcca
agtgactcagcggatgatgattggtctccatggtcagattggacaccttgctctgtgact
tgtggtcatggcatccagcagagaggacgttcctgcgacagccttaataacccctgtgaa
ggctcctctgtacagacacggtcttgccatatccaggaatgtgacaagagatttaagcaa
gatggtggttggagccattggtcaccatggtcatcatgttcagttacctgcggaagtggt
caaatcaccagaatccgtctctgcaactctcctgttcctcagctgaacggaaagccatgt
gaagagaaagaacgccaagaagggacaaggcggtactggaggcggagatga

KEGG   Xenopus laevis (African clawed frog): 779026
Entry
779026            CDS       T01010                                 

Gene name
thbs2.L, thbs2, tsp2
Definition
(RefSeq) thrombospondin 2 L homeolog
  KO
K16857  thrombospondin 1
Organism
xla  Xenopus laevis (African clawed frog)
Pathway
xla04115  p53 signaling pathway
xla04145  Phagosome
xla04350  TGF-beta signaling pathway
xla04510  Focal adhesion
xla04512  ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:xla00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04350 TGF-beta signaling pathway
    779026 (thbs2.L)
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    779026 (thbs2.L)
 09140 Cellular Processes
  09141 Transport and catabolism
   04145 Phagosome
    779026 (thbs2.L)
  09143 Cell growth and death
   04115 p53 signaling pathway
    779026 (thbs2.L)
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    779026 (thbs2.L)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:xla04131]
    779026 (thbs2.L)
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:xla00536]
    779026 (thbs2.L)
   04990 Domain-containing proteins not elsewhere classified [BR:xla04990]
    779026 (thbs2.L)
Membrane trafficking [BR:xla04131]
 Endocytosis
  Phagocytosis
   Opsonins
    779026 (thbs2.L)
Glycosaminoglycan binding proteins [BR:xla00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   779026 (thbs2.L)
Domain-containing proteins not elsewhere classified [BR:xla04990]
 Thrombospondin domain-containing proteins
  Thrombospondins
   779026 (thbs2.L)
SSDB
Motif
Pfam: TSP_C TSP_3 TSP_1 TSP1_spondin VWC EGF_3 cEGF TSP1_ADAMTS EGF_CA Laminin_G_3 EGF TSP1_CCN Laminin_G_2 Laminin_G_1
Other DBs
NCBI-GeneID: 779026
NCBI-ProteinID: XP_018088902
Xenbase: XB-GENE-6253120
LinkDB
Position
8S
AA seq 1176 aa
MGMMKGIFLLLMLVMPQTHQAAESGNDDNSVFDLFELTGYNRKAGSRKPQGLHLVKGPDP
SSPAYRIEDADLIPPLPEDKFQDLLDAIRADRGFILLATLRQAKKSRGALLSVERKDGGG
HIFSLISNGRARTLDLSLSGERKQQVVSVEDAVLATGNWTNITLFVQEDRAQLYVGCNKM
ENAELDVPIQKIFTENLASTAHLRVAKGGVKDNFQGVLQNVRFVFGTTLEAILRNKGCLS
MTNSVITLDNPVNGSSPAIRTNYIGHKTKDLQAVCGFSCDDLSKLFAEMKGLRTLVTTLK
DQVTKETEKNELIAQIVTRTPGVCLHNGVLHKNRDEWTVDSCTECTCQNSATICRKVSCP
LMPCTNATIPDGECCPRCWPSDSADDDWSPWSDWTPCSVTCGHGIQQRGRSCDSLNNPCE
GSSVQTRSCQIQDCDKRFKQDGGWSHWSPWSSCSVTCGSGQITRIRLCNSPVPQLNGKQC
EGEGRENKPCQKDPCPINGQWGPWSLWDTCTVTCGGGMQKRERLCNNPKPQYEGKDCIGE
PTDSQICNKQDCPIDGCLSNPCFAGVKCTSFIDGSWKCGSCPPGYRGNGITCKDIDECKE
VPDACFTLNGVHRCENTEPGYNCLPCPPRFTGTQPFGKGIEEAKANKQVCKPRNPCADGT
HDCHKNARCIYLGHYSDPMFRCECRPGYAGNGIICGEDTDLDGWPNENLTCVDNATYHCL
KDNCPNLPNSGQEDYDKDGMGDACDKDDDNDGILDDRDNCQFVYNPAQYDYDRDDVGDRC
DNCPYNHNPDQADTDRNGEGDACSVDIDGDGILNERDNCAYVYNVDQKDTDKDGVGDQCD
NCPLEHNPEQTDSDSDLIGDKCDNNQDIDEDGHQNNLDNCPYIPNANQADHDKDGKGDAC
DHDDDNDGVPDDKDNCRLVPNPDQTDTNGDGRGDACQYDFDDDSIPDAEDVCPENVEIST
TDFRKFQMVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGFDEFSAVDFSGTFFI
NTERDDDYAGFVFGYQSSSRFYVVMWKQITQTYWDTTPTVAQGYSGLSIKVVNSTSGPGE
HLRNALWHTGNTPGQVRTLWHDPHQKGWKDFTAYRWHLTHRPKTGFIRVVMYEGKRVMAD
SGPIYDKTYAGGRLGLFVFSQEMVFFSDLKYECRDS
NT seq 3531 nt   +upstreamnt  +downstreamnt
atggggatgatgaagggaattttcctactgttgatgttggtcatgcctcagacacatcaa
gcagcagaatctgggaatgatgataacagtgtatttgatctgtttgagttaacgggatac
aaccgcaaggctggttctcgtaagcctcaaggacttcatttagtaaaaggacctgaccct
tcaagcccagcttacagaattgaagacgctgacttgatccctccactgccagaagataaa
ttccaagacttgctagatgcaatacgtgccgatagggggttcattctgttggctactctg
cgtcaagcaaagaagagtcgaggggcacttctgtctgtggagagaaaagacggtggtgga
cacatcttcagtcttatctccaatggtcgggctagaaccctagatttaagtttaagcgga
gaaaggaagcagcaggtggtgtctgtagaagatgctgtcttggctactggcaactggacg
aacatcactctctttgtgcaagaagaccgcgcacaactctatgtaggatgcaacaaaatg
gaaaacgctgagctagatgtgccaatacaaaaaattttcactgagaatctggcaagcaca
gctcatcttcgagtagcaaagggaggagtaaaggacaactttcagggagtccttcagaac
gtgcgctttgtgtttggaaccactttggaagctattctgagaaacaaaggctgtttaagc
atgacaaactcagtcatcactttagacaatccagtgaatggctcaagcccagccatccga
acgaattacattggccacaaaacaaaggatctgcaagctgtgtgtggcttttcctgcgat
gatctgtccaagctgtttgcagaaatgaaaggcttacggacgctagtcacaactctcaaa
gaccaagtcaccaaagagacggagaaaaatgaacttattgctcagatagtaacaaggacg
ccaggtgtttgtctccacaatggagtcttgcacaagaacagagatgagtggaccgttgac
agctgcactgaatgcacatgtcagaactcagctactatatgccgaaaggtatcttgccct
ctgatgccctgcaccaatgccactattccagatggagaatgctgtcccagatgttggcca
agcgactcagcggatgatgattggtctccatggtcagactggacaccttgctctgtgaca
tgtggtcatggcatccagcagagaggccgttcctgtgacagcttaaataacccctgtgaa
ggctcctctgtacagacacgttcttgccaaatccaggattgtgacaagagatttaagcaa
gacggtggttggagccattggtcaccatggtcatcgtgctcagttacatgcggaagtggt
caaatcaccagaatccgtctctgcaactctcctgttccacagctgaatgggaagcaatgc
gaaggcgaaggaagggagaacaaaccatgtcagaaagacccatgcccaattaacggtcag
tggggtccttggtcactgtgggacacatgcacagttacttgcggtggtggaatgcagaag
cgagaacgtctgtgcaataaccccaaacctcagtatgagggtaaagattgtattggtgag
cctactgactctcagatctgcaacaagcaggactgtcccatagatgggtgtctctctaac
ccttgctttgctggagtcaaatgcaccagcttcatcgatggatcttggaaatgtggttcc
tgcccaccagggtacagaggaaatggaatcacatgcaaagatattgatgagtgcaaagag
gtgcctgatgcctgctttactctaaatggagttcatagatgtgagaacacagagccagga
tataattgtcttccatgccctccacgtttcacaggaactcagccatttggtaaaggcatt
gaggaagctaaagccaataagcaggtttgcaagcctcgcaacccatgcgcagatggtacc
cacgactgtcacaagaacgccagatgtatctacctaggccactacagcgaccccatgttc
cgctgcgagtgcagacctggttacgccggaaatggcatcatttgcggtgaagacaccgat
ttagatggatggccaaacgagaacctcacgtgtgttgataatgctacttatcactgcttg
aaagataactgccccaacctccccaattcaggccaggaagactacgataaggatggaatg
ggagatgcctgcgataaagacgatgacaatgatggaatcctagatgacagggacaactgt
cagtttgtgtacaaccctgcacaatatgactatgatcgagatgatgtaggagaccgttgt
gataactgtccctacaaccacaacccagaccaggctgacacagatcgcaatggagaagga
gatgcctgttctgtggacattgatggagatggaattctgaacgagagagataactgcgcc
tatgtgtacaatgtagaccagaaagacacagataaggacggcgttggagaccaatgtgat
aactgcccactggaacacaatccggaacagactgactctgattctgatctcattggagac
aagtgtgacaacaaccaggatatagatgaggatgggcatcagaataacctagataactgc
ccctatatccccaatgcaaaccaggctgatcacgataaggatggcaagggtgatgcatgt
gaccatgatgatgacaatgatggtgttcctgatgataaagataactgccgattggtccct
aacccagaccagacagatactaatggtgatggccgtggagatgcttgccagtatgacttt
gatgatgacagcattcccgatgcagaagatgtttgcccagagaatgtggaaatcagcact
acggacttccgtaaattccaaatggtgcctttggatcctaaagggacatcacagattgat
cctaactgggtggtgagacatcaaggcaaagaattggtgcagactgttaactgcgatcct
ggaatagcagttggttttgacgagttcagcgctgttgacttcagtggcacatttttcatc
aacaccgagagagatgatgattatgctggctttgtgtttggataccagtccagcagcagg
ttttacgtggttatgtggaagcaaatcacacagacatactgggacacaacccctacggta
gctcagggctactctggcctctcaatcaaggttgtgaactctacctctggaccaggggag
cacctacgaaatgcactgtggcacacaggaaacactcccgggcaggttcgcaccttatgg
catgatcctcaccagaaaggctggaaagatttcacagcttacagatggcacctgacacac
agaccaaagactggtttcattagagttgtcatgtatgaaggcaagagagttatggccgac
tcaggaccaatttatgataaaacatatgctggaggaagattaggattgttcgtcttctca
caagagatggtcttcttttctgatctcaaatacgagtgcagagactcataa

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