Xenopus laevis (African clawed frog): 394409
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Entry
394409 CDS
T01010
Symbol
parn.L, parn, parn-A, xparn
Name
(RefSeq) poly(A)-specific ribonuclease PARN
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
394409 (parn.L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xla03019
]
394409 (parn.L)
Enzymes [BR:
xla01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
394409 (parn.L)
Messenger RNA biogenesis [BR:
xla03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
394409 (parn.L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
NCBP3
RRM_1
Motif
Other DBs
NCBI-GeneID:
394409
NCBI-ProteinID:
NP_001081143
Xenbase:
XB-GENE-1003109
UniProt:
Q90ZA1
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Position
9_10L:99997992..100073260
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AA seq
631 aa
AA seq
DB search
MEITRSNFKDTLPKVYKAIEEADFLAIDGEFSGISDGPSVSTLTNGFDTPEERYTKLKKH
SMEFLLFQFGLCTFNYDNTEAKYLMKSFNFYIFPKPFNRNSPDKKFVCQSSSIDFLANQG
FDFNKVFRNGIPYLNQEEERVLRDQYEDRRSQSNGASTMSYISPNSSKTPVSIPDEQKGF
IDKVVERVEDFLKNEQKSMNVEPCTGYQRKLIYQTLNWKYPRGIHVETVESEKKERYIVI
SKVDEEERKRMEQQKQAKEREELDDAVGFSRIIQAISSSGKLVVGHNMLLDVMHTIHQFF
CQLPDELNEFKEVTNCVFPRVLDTKLMASTNPFKEIIYNTSLAELEKRLKEAPFKPPKVD
SAEGFQSYNTASEQPHEAGYDAYITGLCFISMANYLGSFLSPPKDYVSCRSKIVRPFFNK
LFLMRIMDIPYLNLEGPDLQPKRDNVLHVTFPKEWKTSDLYQLFSAFGNIQVSWIDDTSA
FVSLSQPEQVQIAVNTSKYAESYRIQTYAEYIEKKNDESQTKRKWAEDGWKDLERKRLKT
QYNSYIPQNPVFYGNCFAPSFAVKRSMSPIQEEAASDDTEEVHTHENDPSNPGATEQGKK
PKNHKRQKIDSAPPETSDGGSSVLFEVPDTW
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atggaaatcaccaggagcaattttaaggatactttgccaaaagtttataaagcaattgaa
gaggcagacttcttggctattgatggtgaattttcaggtataagtgatggcccatctgtt
agcactttaacaaatggctttgatacgccagaggaaagatatacaaaactgaaaaagcac
tctatggagtttttactttttcagtttggcctttgcacttttaactatgataacacagaa
gcaaagtacttaatgaaatcctttaacttttatatatttccaaagccgttcaacagaaat
tccccagacaagaagtttgtttgtcagagctcaagtatagactttctggctaaccagggt
tttgattttaataaagtttttcgcaatggcattccatatctgaatcaggaggaggaaagg
gttttgcgagatcagtatgaagataggcggtctcagtcaaatggagcaagcacaatgtcc
tacatatctccaaattcctcaaagactcctgtgagcatcccagatgagcagaagggtttt
attgacaaagtggtggaacgggttgaggattttttaaaaaatgaacagaaaagcatgaat
gtggagccttgcactgggtatcagagaaagctaatttaccagacgttgaactggaagtac
ccacgaggcattcacgtggagaccgtggaatcggaaaagaaggagcggtacattgtcatc
agtaaagttgatgaagaagagcgaaaaagaatggagcagcagaaacaagcaaaagaacgg
gaggaactagatgatgcagtaggcttttcccgaattatccaagcaatctcatcctcgggt
aaacttgtagttggccacaacatgctgttggatgttatgcacaccatacatcagtttttc
tgccagctgcctgatgagctaaatgagtttaaggaggtgacgaattgtgtgtttccaaga
gtcttggatacaaaacttatggccagcacaaatccatttaaggaaattatttataacaca
tcccttgccgaactggaaaagagattaaaagaggctcctttcaaacctcctaaagttgac
agtgctgagggttttcaaagttataacactgcatctgaacagcctcacgaagcaggatat
gacgcctacatcacaggactgtgctttatttctatggcaaactatctaggttcgtttctt
agtccaccaaaagattatgtatcatgtcgatcaaaaatcgttcgaccattttttaacaag
ctgtttttgatgagaattatggacataccttatctcaatttagaaggaccagacttgcag
cctaaaagggacaatgtacttcatgttacttttccaaaagaatggaagaccagtgacctc
taccaactattcagtgcctttggtaatattcaggtgtcctggatagatgatacatctgca
tttgtgtcactaagccaacccgaacaggtccaaatagctgtgaacaccagcaagtacgca
gaaagctatcgtatccagacctatgcagaatatattgaaaaaaaaaatgatgaaagccaa
acaaaaagaaaatgggcagaagatggatggaaagacttggagaggaagagactgaaaacc
caatacaattcttacattccgcagaatccagtgttttacggtaactgttttgctccaagt
tttgctgtgaaaagaagcatgagccccatccaagaggaagcagcctctgatgatactgaa
gaagttcatacccatgaaaatgatccttccaaccctggtgctacagagcaggggaagaaa
cccaagaaccacaagagacaaaaaatagactctgctccaccagaaaccagtgacggtggc
tcttctgtcctttttgaagttccagatacttggtag
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