Xenopus laevis (African clawed frog): 398567
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Entry
398567 CDS
T01010
Symbol
casc3.S, barentsz, btz, casc3, casc3.L, mln51
Name
(RefSeq) CASC3, exon junction complex subunit S homeolog
KO
K14323
protein CASC3
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03013
Nucleocytoplasmic transport
xla03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
398567 (casc3.S)
03015 mRNA surveillance pathway
398567 (casc3.S)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xla03019
]
398567 (casc3.S)
Messenger RNA biogenesis [BR:
xla03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
398567 (casc3.S)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Btz
Motif
Other DBs
NCBI-GeneID:
398567
NCBI-ProteinID:
NP_001082558
Xenbase:
XB-GENE-969217
UniProt:
Q801T5
A0A1L8EKQ0
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All DBs
Position
9_10S:complement(1574269..1592109)
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AA seq
691 aa
AA seq
DB search
MADRRRRRRRASQDSEELGEEEESASDSAGSGGESVGPIRQERAEQSKTEPARAEQETRR
AEPAREGKESECESEDGIEGDAVLSDYESADESEEEEAHNSEEDPLKTTLKQENNVEEAP
ATREQKPKSKGAVTGERQSGDGQESTEPEENNTSKKSQKQLDDDEDRKNPAYIPRKGLFF
EHDLRGHVNDEEVRPKGRHPRKLWKDEGRWVHDRFREDEQAPKSREELVSIYGYDIRSCR
NPEEIHPRRPGKPRFSSPSRREENDEKPSRPSNRYQDSGVTQPLRPYTNRNAPPSSKVGP
SRTYSRQGGYKENRASYQSEEEAAPHTYERRQDYGGHRSRSTDQGPPPPREYSPEADPII
KEEAFTEKQTAEPSPPPPDRPVEKKSYSRARRSRIKVGDTGKSMEDTTAAELPPPPPVPP
AVAAEFTPAPLNVKQGNWEPPAEGGMSGIDDELSKMNLSEQSWNQGQPAYISPRGIPNPM
HMGAGPPQYSRMEGMAVQAGRVKRYSSQRQRPVPDPAAMHISLMESHYYDSLQFQGPIYA
HGDSSPSMPPQGMIVQPEMHLSHPGMHPHQSPATISTPNIYPAPVSLTPGQPPPQQLLPP
PYFTAPSNVMNFGNPTYPYPPGALPPPPAHLYPNAQAQSQVYGGVTYYNPVQQQVQQQVL
PKPSPPRRTSQPVTIKPPPPEPQSLPVALTF
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atggcggataggagacggcggaggagacgagcgtcccaagacagcgaggagttgggagaa
gaggaggagtcggccagtgacagcgcgggctccgggggagagtcggtcgggcccatcaga
caagagagagccgagcaaagcaaaaccgagccggcgagagcggagcaggagactcggaga
gccgagccggcgagggaagggaaagagtccgagtgtgaaagtgaggatggaattgaaggg
gatgcagttttgtcggattacgaaagcgccgatgagtctgaagaagaggaggctcacaac
agtgaagaagatccattgaagacaaccttgaaacaggagaacaatgtggaggaggcacct
gctacaagagaacagaagcctaaatctaagggagcagtgacaggggagcgtcagagtggg
gacgggcaggagagcacggaaccagaagagaataatacctctaagaaatcccagaagcag
ctggatgacgatgaagaccggaagaatccagcttacatccctcggaaagggcttttcttt
gagcatgacctgcgtggacatgtcaatgatgaggaagtcaggccaaagggtcgacatcca
cgcaaactctggaaggatgaggggagatgggtacatgaccggttccgtgaggatgaacag
gcccccaagtctcgtgaagagctcgtatctatatacggttatgatattcgatcttgcaga
aacccagaagaaatccaccccaggcggccgggaaaacccagattcagcagcccctctagg
agagaggaaaacgatgagaaacctagtcggccttcaaatcggtaccaggactctggtgtt
acccagcctctacggccgtacaccaatcgcaatgcacctccctctagcaaagttggtccc
tccaggacttactcccggcagggtggatataaagagaaccgtgccagttaccagtcagag
gaggaggctgcacctcacacatatgagcgcagacaggactatggtgggcacagatcacgc
agcacagaccaaggtccaccccctccaagagagtactcgcctgaagcagatcctatcatc
aaggaagaagcattcactgagaagcaaaccgcagaaccttctccaccacctcctgacaga
ccagtcgagaagaaatcctattctagggctagaaggagtcggatcaaagttggcgataca
ggaaagagcatggaggacactacagctgctgaactacccccaccacctcctgtgccccct
gctgttgctgctgagttcacccctgcaccactgaatgtgaagcaaggcaactgggagcct
cctgcagaaggtggaatgtctggaattgacgacgagttgtccaagatgaacctttcagag
cagagctggaaccaaggacagcccgcatacatttcccctcgtggtattcctaatcccatg
cacatgggtgctgggccaccgcagtatagtcggatggaaggcatggcagttcaagctggt
cgtgtcaagaggtattcttcccagcgtcagaggcctgtcccagaccctgcagccatgcac
atcagcctcatggaaagtcattattatgattcactccagttccagggaccaatatatgct
catggtgacagctcaccctctatgccccctcagggtatgattgtacaacctgaaatgcac
ctttctcacccaggcatgcacccacatcagtctcctgctaccatatctaccccgaatatt
taccctgctccagtctctctcacacctggtcagccaccaccccagcagctcctgcctcct
ccatattttactgctccatccaatgttatgaattttgggaatcccacctatccataccct
ccaggagctctgcctccaccaccagctcatctttacccaaatgcacaggcccagtcccag
gtgtacggaggggtgacttattataaccctgtacagcagcaagtacagcagcaagtactg
ccaaagccttctcctccaagacggacctctcagccagtcaccatcaaacccccaccacca
gagccacagtcgctcccagtcgccctcacattctga
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