Xiphophorus maculatus (southern platyfish): 102219650
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Entry
102219650 CDS
T02923
Symbol
col11a1
Name
(RefSeq) collagen alpha-1(XI) chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
xma
Xiphophorus maculatus (southern platyfish)
Pathway
xma04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
102219650 (col11a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
xma00536
]
102219650 (col11a1)
Glycosaminoglycan binding proteins [BR:
xma00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102219650 (col11a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
102219650
NCBI-ProteinID:
XP_023182344
Ensembl:
ENSXMAG00000006525
LinkDB
All DBs
Position
21:17552116..17650280
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AA seq
1810 aa
AA seq
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MEMQRWSTRWKTKRWLMDSTRTAFVTLTLLLQAACVRAAEPVDVLKALGFQNYPEGVTKV
TGFCANRRASKSDSAYRIARQIQISAPTSQLFPGGVFPEDFSILTTVRPESGLQSFLLSI
YNEQGVQQLGVEVGRSPAFLYEDQTGKPAPEDYPLFTSLNLSNGKWRRVAISVEKKTVTI
IVDCTRKITKPLLRSDQGSISTNGITVFGTRILDEDVFQGDIQQLLIVADPKAAYDYCDH
YSPDCDTPHKDSLQAQEPDEEYITDDIDYRQFYEYSEGPTDSVPTDEYSEKQLNNVEGDY
YTDIDYGTLDGTQTQSPVATSGPSEAVKEDFIGAHATEAPTLAPEPGTVLETGDNSETGA
EAYDFKEYDLTEYDLGKLDNKYDYGTYDEYGPLPSKAPTAYGEEVGPGVAAETDFSESTI
AGSQAAFGQKGEKGEPAVIEPGMLIEGPPGPPGPSGLPGPSGLQGPPGTAGDPGDRGPPG
RAGLPGADGLPGPPGTMLMLPFRFGGDGEKGPVVSAQEAQAQAILSQARLAMRGPPGPMG
LTGRSGPVGPPGSGGLKGESGDHGPQGPRGIQGPPGQPGKVGKRGRAGADGARGMPGEPG
SKGDRGFDGLPGLPGEKGHRGEPGSMGPAGAPGEDGQRGEDGEIGPRGLAGESGPRGLLG
PRGPPGPPGVPGVAGVDGPPGPKGNMGPQGEPGPPGQQGIPGTQGLPGPQGPIGPPGEKG
PQGRSGLPGLPGADGPPGHPGKEGPPGEKGSQGPLGPQGPLGYPGPRGVKGADGVRGLKG
SKGEKGEDGFPGFKGDMGIKGDRGEIGMPGSRGEDGPEGPKGRAGPNGESGPLGPAGEKG
KLGVPGLPGYPGRQGPKGSSGFPGFPGANGEKGARGIAGKSGPRGQRGPTGPRGARGARG
PTGKPGPKGTAGNDGPPGPPGERGPQGPQGPVGFPGPKGPPGPSGKDGLPGHPGQRGETG
FQGKTGPPGPGGVVGPQGPTGETGPVGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQG
SPGKDGPPGLRGFPGERGLPGATGPSGLKGGEGPQGPPGPVGSPGERGNAGPAGPIGLSG
RPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPQGPPGEDGDKGEAGEPG
QKGSKGDKGEQGPPGPAGVQGPVGAPGPAGADGEPGPRGQQGMFGQKGDEGPRGFPGPPG
PIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPSGADGPQGPPGGVGPVGSVGEKG
EQGEAGNPGPPGEPGTGGPKGERGEKGEAGPPGAAGPAGAKGPPGDDGPKGNPGPVGFPG
DPGPPGEPGVAGTDGESGEKGEDGEPGQPGPPGPSGEAGPPGPPGKRGPPGALGAEGRQG
EKGAKGEAGAEGPAGKTGPVGPQGPPGKPGPEGLRGIPGPVGEQGLPGAPGQDGPPGPMG
PPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGTPGGKGDSGISGASG
PLGPPGPPGLPGPQGPKGAKGSSGPAGPKGDTGIIGPPGPPGPPGEVIQPLPIQSPKKTK
RSSDMQSDAAGGFVDYGEGMEDIFGSLNNLKQDIERMKYPMGTQNNPARTCKDLQLCHPE
FPDGEYWIDPNQGCSGDSFKVYCNFTAGGETCIYPDKKSNGVRISSWPKEVPGSWFSEFK
RGKIFSYVDADGNPINMVQMTFLRLLTASARQNFTYSCHQSVAWHDAASDSHDKALRFLG
ANDEEMSFDNNPFLQAISDGCSTRNGYGKTVMELNTPKIDQVPIVDVMLTDFGDPNQKFG
FEVGPVCFLG
NT seq
5433 nt
NT seq
+upstream
nt +downstream
nt
atggagatgcaaaggtggtccacaaggtggaaaacgaaacgttggcttatggattccact
agaactgcattcgtcactttaacactgcttctgcaggctgcttgtgtcagagcagcagag
ccagtggacgtcttaaaagcgttaggatttcaaaattaccccgaaggagtgacaaaagta
acgggattttgtgcaaaccgaagagcatcgaagtcagactcagcctacagaatcgccagg
cagatccagatcagcgcccccacctcacagttattccctggcggcgtttttcctgaggat
ttctccatcctgaccaccgtgcgccccgagtctggcctccagtccttcttgctgtccata
tacaatgagcaaggagttcagcagctgggtgtagaggtgggacgctcacctgctttcctg
tatgaggatcaaactggcaagccagccccggaggactaccccctgttcacctctctcaac
ctttctaatggaaagtggcgccgtgtggccatcagtgttgagaagaagacggtcaccatc
attgtggattgtacgaggaagatcaccaagcctctgctcaggagtgaccaaggctccatc
agcaccaacggcattacggtgtttggcaccaggatcctggatgaggatgttttccagggg
gacatccagcagctcctgattgttgctgatcctaaagcagcatatgactactgtgaccat
tacagcccagactgtgacacgccgcacaaggattcgcttcaggcccaggagccagacgaa
gagtacattactgacgatatagattacagacagttctatgaatactctgaaggaccaaca
gactccgtcccgactgacgaatactctgaaaaacagctaaacaatgtagagggagattac
tatacagacattgactacggaactctagatggtactcagactcagtcacctgttgccacg
agcggaccaagcgaggctgtaaaggaggattttatcggggcgcacgccaccgaagcccct
actctcgctccggagcccggcactgtgttggaaacgggggacaactcggagaccggtgcg
gaagcgtatgactttaaggagtatgacctgaccgagtatgacttgggcaagttagacaac
aagtatgattatgggacatacgatgagtacggccccctcccatctaaagccccgacagcc
tatggtgaggaagtggggcccggggtcgctgccgaaaccgacttttctgaaagtacaatt
gctggttctcaagccgccttcggacagaagggcgagaagggcgagccggccgtgatcgaa
cctggcatgctgattgaaggaccaccaggaccacccggcccatctggtcttccgggacca
tcgggccttcagggacccccgggcactgctggagatcctggtgacagaggtcctcctggc
cgcgccggtctccccggcgccgacggcttaccgggacctccaggtaccatgctgatgctc
ccatttcgcttcggtggggacggcgagaagggtccggtggtgtcggcccaagaagcccaa
gcacaggccatcctctcccaggccaggctggcgatgaggggacctcctgggccaatgggt
ttgactggaagatctggaccggtgggtccacctggctcaggtgggctgaagggtgaaagc
ggagaccacggtcctcagggcccacgtggcattcaaggaccccctggacaacctggcaaa
gttggtaaaaggggtcgggccggtgctgacggcgctcgtggaatgcccggagagccaggc
tctaagggcgaccgaggctttgatggacttcccgggctgcctggagaaaagggccacagg
ggcgagccggggtcgatgggaccagcaggagccccaggagaggacggacagagaggtgaa
gacggagagattgggcccagagggttagctggagagagcgggcccagaggtttgctggga
cctcgcggtcctccgggaccccccggagtgccgggcgttgccggagtggacgggccaccg
ggtcccaaaggcaacatgggacctcaaggggaaccgggcccaccgggtcagcagggaatc
cctggaacacagggcctccccggtcctcaaggtccgattggaccacctggagaaaaaggc
cctcagggcaggtcgggacttcctggactgcctggagctgacgggcctcctggtcatccc
ggcaaggagggtccacccggagagaaaggttctcagggtccactgggtcctcagggtcct
cttggttatcctggcccccggggtgtaaagggggccgacggagttcgtgggctaaaggga
tcaaaaggagagaagggcgaggacggtttcccaggttttaaaggagatatgggaatcaaa
ggtgaccggggtgaaattggcatgcctgggtcccgtggagaagatggtcctgagggacct
aaaggcagagctggccccaacggagagtcggggcctcttggtccagcaggagagaaaggt
aaacttggtgtcccaggattgccaggttatcccggacgacagggaccaaagggctcgagt
ggattccccggcttccctggagcaaacggcgagaaaggagcacggggcattgctgggaaa
tctggtcctagaggacagagaggtccaacggggcctcgtggggctcgaggagccagaggt
ccaacgggcaaacccggtcccaagggcacagcaggaaacgacggcccccctggcccgcct
ggtgagagaggacctcaaggacctcaggggccagtgggcttccctggaccaaagggcccc
cctggaccatctggaaaggacggccttcccggacaccctggacagcgtggagagacgggt
ttccaaggaaaaactggccccccaggaccaggaggtgttgttgggcctcagggacccact
ggggagaccggtcctgttggtgagcgcggacatcctggacccccaggcccacctggagag
cagggtcttccgggtgctgctggcaaggagggagccaagggtgatcctggaccgcaaggc
tcccctggtaaggacggtccgccgggccttcgcggcttccccggagagagaggtctaccc
ggtgccacgggcccatctggtctgaagggtggagagggaccccagggtccacccggtcct
gttggttctcctggtgaaagaggtaatgctggtccagccggcccaattggtttatctggt
agacctggtcctcaaggtcctccaggtcctgctggagagaaaggtgctcctggtgagaaa
gggccgcagggcccagccggacgtgacggggtccagggtcccgtcggtcttcctggcccc
gctggacctcaaggcccacctggagaggacggtgacaagggagaggctggggagccgggc
cagaaaggaagcaaaggtgacaagggagagcagggcccccccggaccggctggtgttcaa
ggccctgtgggagccccaggtcctgctggagctgatggagagccaggtcccaggggtcag
cagggcatgttcgggcagaagggagacgagggtccgagaggcttccctggacccccgggt
cccattggtctacaggggcttcccggacctccaggtgaaaaaggagaaaacggcgacgtc
gggcccatgggtcctcctggtccccctggtcccagaggccctcagggtcccagtggagcc
gacggtcctcaaggtcctccaggtggtgtgggccccgtaggatctgtgggtgagaagggc
gaacaaggggaggctggaaacccgggaccacctggagagcctggaactgggggacccaaa
ggtgagagaggagagaaaggagaggccggaccccccggagctgctgggcccgccggtgcc
aaagggccccctggagatgatggtccaaagggcaaccctggacctgtcgggttccctgga
gacccaggaccccctggagagccaggcgtcgctggtactgatggagaatcaggagagaaa
ggagaggatggtgagcctggtcaacctggacccccgggtccttctggagaggccggtcca
cctggtccacccggcaagagaggacctcctggagctttaggagccgagggccggcaagga
gagaagggcgccaagggtgaagcgggcgctgagggcccagctggtaaaacaggacctgtt
ggaccccaaggacctcctgggaagcccggtccagagggtctgcgtggaatccctggccct
gtgggtgaacaaggactgcccggtgctccaggacaggacggtccaccaggtccaatgggt
ccgccaggtctgccgggcttgaaaggcgaccccggctccaaaggtgaaaagggtcaccca
ggtttgattggcttgattggaccccctggagagcaaggagagaagggagatcgaggtctt
cccggaccccagggcacccctggtggcaaaggtgactctggcatcagtggagcctctggt
cccctcggtccccctggtccccctggtctacctggtcctcaaggtccgaaaggagccaag
ggttcaagtggtcctgctggtccaaaaggagacactggtataataggtcctccaggtcca
cctggcccaccaggtgaggtcatccagccccttcccattcagtcgcccaagaagaccaag
cgctccagtgacatgcagtcagacgccgccggcggcttcgtggattacggcgaaggcatg
gaggacatctttggctcgctcaacaacctcaaacaggacatcgaacgcatgaaatacccc
atgggcacgcagaacaacccggccagaacatgcaaagacctccagctgtgccaccctgag
ttccccgatggcgagtactggattgatcccaaccaaggctgctctggggattcattcaaa
gtctactgtaacttcactgctgggggtgaaacctgcatctatccggataaaaagtccaat
ggggtcagaatatcctcgtggcctaaggaggttccaggttcatggttcagtgaattcaag
cgcggtaaaatattttcctatgtggatgccgacggaaaccccatcaacatggtacagatg
accttcctcagactactgaccgcctcagccaggcaaaacttcacctacagctgccaccaa
tctgtggcgtggcacgacgcggccagcgacagccacgacaaggcgctgcgcttcctgggc
gccaacgacgaggagatgtctttcgacaataacccgttccttcaggccatctcggatgga
tgttcgacaagaaacggctacggaaagactgtgatggagctcaacactcccaaaatcgac
caggttccaatcgtcgatgtcatgttgactgatttcggggacccgaaccagaagttcggg
tttgaagttggacctgtctgcttccttggataa
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integrated database retrieval system
