Xiphophorus maculatus (southern platyfish): 102220776
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Entry
102220776 CDS
T02923
Symbol
topbp1
Name
(RefSeq) DNA topoisomerase 2-binding protein 1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
xma
Xiphophorus maculatus (southern platyfish)
Pathway
xma03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
102220776 (topbp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xma03032
]
102220776 (topbp1)
03400 DNA repair and recombination proteins [BR:
xma03400
]
102220776 (topbp1)
DNA replication proteins [BR:
xma03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
102220776 (topbp1)
DNA repair and recombination proteins [BR:
xma03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
102220776 (topbp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
TopBP1_BRCT0
BRCT_2
RTT107_BRCT_5
LIG3_BRCT
ECT2_BRCT0
Motif
Other DBs
NCBI-GeneID:
102220776
NCBI-ProteinID:
XP_023182518
Ensembl:
ENSXMAG00000001818
LinkDB
All DBs
Position
21:6555489..6568269
Genome browser
AA seq
1509 aa
AA seq
DB search
MSKAGKQDFIVKFVESEGSKPDYAVKAYEAILELQSEKYLKTIQEEDVLQMDRKDKSLFV
FIKFTTPAFLHCKKLGCRIVSPLVVLDCLQQQRCVPKAEKPVYNMAMADVTISCTSLDKA
TRGEVMDLVQLMGGRVYLDLNVSVSHLIAGEVGSKKYLVAAKLGKPILLPTWVKACWEKS
QDSLFRYTDLPVEDYLCPVLLGCIVCVTGLSSTERKEVQRLCEQHGAKYTGQLKMNECTH
LIVSEPTGQKYECARKWNVYCVSLHWLFDSIEKGYSQDESRYMVQRNASTTTQPNTSTPT
GTSKREDGPSLLGLSNISVNTSAAINDTALTNITMSRMETPDPIDRLDLTVCPADDVLDG
CKLYLSGFPEKNLEKLRRLVSAAGGLRFNQPREDLTHVIVREVDQELQKFLSTATHRPHV
VTAQWLLDCFSKGMLVPEDGYLHPDCLPPASDAVAVSVSARPAARHRSSSGPPVANPNTP
KEPITDEDLLSQYMDDDPTVVDLAPENTSMKSFSAAAEPQPESWTPLHTGGSEQEPQPRG
SLFSGKSFLLVGFGVEAEAQLSALLKEQGGRLLSGRSRVVGDFAVVPQLGCTVEATVDEV
VTDTWLVMCVENERVLPLSSNPLFTPVPVREGYLPLKDCVLSVSQFTGAERESLVELAKH
LGANVQDYFVRLSNQKKGMLASTHLVLQTPDGTKYQAAKKWGLPAVTMHWILESARTGRR
VTEEKYLVDLPSSPEKEDESFVSGSQKAAPLQPARCSPEIPLLGPQGGKAVTPLDCGRFQ
SKVFRSMLDEMKPRENPSTLTPNQDGGRGKPLQKEPSLQLDTPSRFLVRDQLFRPSFNFK
DALKDLETPSGRSKPGERVETPLTNVINRNRKVALANSSVNNATEMQEVSVSPQLAKTID
KEKDSGPLTGVVICVGKKLSKMQSELNAIAASLGADFRWACDNTVTHYIYQGRVGDNSRE
YKAVKEKGLHVVSQYWLHACAEEQKHVSESLYPFTYNPKMSLNLSQVPSSSQRSPPLTRT
QRKDATESKHNKSAVVAAEKSAVVHPVSNGCVDQDEVNDTTEKRDTLEMRENLQRQLQEI
MSATKMTTGRRASVRLARMGSGCTDLGPNTPEGSRVGRSGSRRTLEALRVPREAVTDINT
EPSQSEQIVWDDPTAREERAKLADNFQWPGSPSQHSEPLTAAPPPTAENGPRFKDSMTDS
ELVEMAACDIINQQMGQKVVAPSSEDPEEDILTPQAPSIAFPLAKPLVAPEPQEEKEEEN
QPPRFQLSSLSPQERIDYSHLIEELGGIILDKQSFDPSCSHIIVGSPLRNEKYLAAMAAG
KWILHRSYLEACRSVGHFIQEDDYEWGSCSILEALPSITSQQKRLALAAMRWRKALQGSS
EHDGAFSGWTVMLNIDQSRESGFRRLLQSGGAKVLPSPSPSLYREASHLFADFSRLKPGD
FRVDVAEATAQGVTCLKPEYIADYLMQEPTPPIELYCLTAAPPEEDPCTPSRKRKAAADP
SKLKKSRLN
NT seq
4530 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaagcagggaagcaagactttattgtgaagtttgtggaaagtgaaggatccaaa
ccggattatgcagtcaaagcatatgaggccattctggagctgcagtctgaaaagtattta
aaaaccatccaggaagaagatgttttacagatggaccggaaggacaagtctctgtttgtt
ttcatcaaattcaccactccagcttttctgcactgcaaaaagcttgggtgcagaatagtg
agtccactggtggtgctggactgcctgcagcaacagcgctgtgtccctaaagcagaaaaa
ccagtgtataacatggcgatggctgacgtcactatttcctgcaccagtctagataaagca
acccggggagaggtgatggatctggtgcagctcatgggcggacgggtctatcttgatctg
aacgtatctgtctcacacctgattgctggggaggtgggaagcaaaaaatacctggtggct
gccaagttgggaaaacccatactgctgcctacatgggtcaaagcatgctgggaaaaatca
caagacagtctcttcaggtacacagacctgccagttgaggactacctgtgccccgtgctg
cttggctgtatcgtttgtgtgacgggcctctccagcacagagcgcaaagaggtgcagcgg
ctctgcgagcagcacggggccaaatacaccggccagctcaaaatgaacgagtgcacacat
ctcattgttagtgaaccgacaggtcagaagtacgaatgcgccaggaagtggaacgtgtat
tgtgtgtctttgcactggctgttcgacagcatagagaaaggatactctcaggatgagagc
aggtacatggtgcagcgcaatgcttcaacaaccacacagcccaacacctcaactcctaca
ggcaccagcaagagagaagatggcccatctctgttgggcctgagcaacatttctgtcaac
actagtgcagcgataaacgacaccgctctcaccaacatcaccatgagtcgcatggagacg
ccagaccccatagaccgtttagacctcactgtatgcccagcagatgatgtgttggatggt
tgtaagttatatttaagtggtttcccagagaagaacctggagaagctgcggcggctcgta
agcgctgctggaggcctgcgcttcaaccagcccagagaggatctcactcatgtcattgtg
agagaagtggaccaggagctccagaaatttctgtccacagcaactcacaggccccatgtg
gtaacagcacagtggctgctggattgtttctccaaaggcatgttggtcccagaggacgga
taccttcacccggactgtctccctccagcttcagacgctgtagctgtttccgtctctgca
cgtcctgcggcgagacatcgttcgtcttccggcccgcctgttgccaacccgaacactccc
aaggaaccaataacagacgaggatcttctctcacagtacatggacgacgaccccacagtg
gttgatctggcaccagagaataccagcatgaagtccttcagcgcagctgcagaacctcag
cctgagtcctggacgcccctccacactgggggatcagagcaagagcctcagccacggggt
agtctgttttctgggaaatccttcctgcttgtgggtttcggtgtcgaggctgaggctcag
ctctcggcgctgctgaaagagcaaggaggcaggctgctgtcgggccgcagccgagtggtg
ggggacttcgctgtggtccctcagctgggctgcacagtggaggccaccgtggacgaggtg
gtcactgacacatggctggttatgtgtgtggagaacgagcgcgttctgccgctgtcctct
aaccctctgtttacgcccgttcctgtgagggaggggtacttacctctcaaagactgcgtt
ctgtctgtcagccagtttactggagcagagagggagtctctggtggagctggccaagcat
ctcggagccaatgtccaggattactttgtgcgcctgtccaaccagaagaaaggcatgctg
gccagcactcacctggtgttacagacccctgatggaacaaagtatcaggcagctaagaag
tgggggcttcctgccgttacaatgcactggatacttgagtctgcacggacagggaggagg
gtgacagaggagaaatatctggtggatctgccctcctctccagagaaagaagacgagagc
ttcgtcagcggatcccagaaagcagctccgctccaacccgctcgttgttccccagaaatc
ccgttgctgggtccgcagggcgggaaagcggtcacgccgcttgattgcggtcgctttcag
agcaaagtgtttcgatctatgttggacgagatgaagcccagagaaaacccgagcacactg
acaccaaaccaagatggcggcagagggaaaccactccagaaggagccgtccctgcaactg
gacactccctctcgattcctggtcagggaccagctcttcaggccgtcctttaacttcaag
gatgcactcaaagatttggagactcctagcggaagatctaaacccggggaaagggtggaa
actccacttaccaacgttatcaacaggaaccggaaggtcgctctggcaaacagctcagtg
aataatgccacagaaatgcaggaagtctctgtcagcccccagctggcaaagacaattgac
aaggagaaagactcaggacccctgactggtgttgtgatctgcgtggggaaaaaactgagc
aaaatgcaaagtgaactgaatgctattgctgcttcgcttggagctgacttcaggtgggcc
tgtgataacacagtgacgcactacatctaccagggtcgtgtcggagacaactcccgcgaa
tacaaggcagtgaaggagaagggcctgcatgtggtctcccagtactggctgcatgcttgt
gctgaggagcagaagcacgtctcagagtctctgtatcctttcacttataatccaaagatg
agtctgaacctcagccaggttcccagcagctcccagagatctccgcctttaacacggaca
caacgcaaagacgcgactgaatcaaaacacaacaagtctgcagttgttgctgcagagaaa
agcgcagttgtgcatcctgtaagtaatggatgtgttgatcaagacgaggtgaacgatacc
acagagaaaagagatactctggaaatgagagagaacctgcaaagacagcttcaggagatc
atgtcggccaccaaaatgacaacaggcaggcgggcttctgtcagacttgccaggatggga
tcaggctgcaccgacttgggtccaaacacgcctgaaggcagccgggtcggacgcagtggg
agcagacgtactctggaagctctgagggtccccagagaagcggtaacggacataaacact
gagccgtctcagagtgagcagatagtttgggacgatcctacagccagggaggagagagcg
aagctggctgataacttccagtggcctgggagtccatcacaacactcagagcccctgacg
gcagcaccgcctcccacagcagaaaatggaccgcgcttcaaggactcaatgacggactct
gagctggtagagatggctgcttgtgacattataaaccagcaaatgggtcagaaggtcgtg
gcgccttcatcagaggatccagaagaggacatcctcactcctcaagctcccagcatcgcc
ttccctctcgccaaaccgctagtagcaccagagccacaggaagagaaagaggaagaaaat
cagccgcccagatttcagctgtcgtcgctcagccctcaggagcgaattgattacagtcat
ctgatagaggaactcgggggcatcatcctggacaagcagtcttttgaccccagctgctcc
cacatcattgtagggagtccactgcgaaacgagaagtatctggccgccatggcagccggc
aagtggatcctgcatcgctcgtacctggaggcgtgtcgctctgtgggacacttcattcag
gaggatgattatgaatggggcagctgctccatcttggaggctctgccctccatcacctct
cagcagaagagactggccttggccgcaatgcgctggagaaaagctttgcagggaagctct
gaacatgacggagctttcagtggctggaccgtgatgctgaacatcgaccagagcagagag
tcgggtttcaggcggttattgcagtctggtggagcgaaggtgctgcccagcccctccccg
tcactctacagagaggcctcacatctgttcgcagacttcagtcgtctcaaacccggagac
ttcagagtggacgtagctgaggccacagcacaaggagtaacatgcttgaaaccggagtac
attgcagattacctcatgcaggagccgacgccgcccatcgagttgtactgtctgactgca
gctccgcctgaggaagatccatgcacaccgtcccgtaagcgtaaagcagcagccgacccc
tccaagctgaaaaagagccgtctgaactga
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integrated database retrieval system
