Xiphophorus maculatus (southern platyfish): 102227520
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Entry
102227520 CDS
T02923
Name
(RefSeq) tenascin-like isoform X3
KO
K06252
tenascin
Organism
xma
Xiphophorus maculatus (southern platyfish)
Pathway
xma04510
Focal adhesion
xma04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
102227520
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
102227520
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
xma00536
]
102227520
Glycosaminoglycan binding proteins [BR:
xma00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102227520
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
Fibrinogen_C
EGF_Tenascin
EGF_2
EGF
Pur_ac_phosph_N
hEGF
fn3_2
NDNF_C
Motif
Other DBs
NCBI-GeneID:
102227520
NCBI-ProteinID:
XP_005802200
LinkDB
All DBs
Position
11:2014643..2081065
Genome browser
AA seq
1631 aa
AA seq
DB search
MGTNGFLLSCLTTAVLIQLSTAGLVIRHRRETLMPKKTQENLTLPHPDQPVVFNHVYNIN
VPSTSLCTVDLDSSGGGGVKHKSASMDMQSTEHMEHTVDGDNQIVFTHRINIPKQACGCD
NQLPDIKDILNRLEMLESELSSLREQCTSGAGCCGAQATGEVSTKPFCNGRGNWSTETCS
CSCEPGWKGPNCTEPECPNDCQDQGRCVDGRCECFEGFGGDDCGVELCLLDCGDYGHCVE
GSCLCEEGFIGEDCSQTNCLNNCLGRGRCVDDECICDEPWTGFDCSELICPNDCFDRGRC
INGTCECEEGFTGDDCGELSCRENCSKHGVCVNGQCKCQINYGGEDCSKLLCPQNCNERG
HCFNGKCICDPGFEGDDCSVLSCLDNCSNRGQCINGECVCDIGYEGEDCSELSCPNNCQE
QGRCVDGQCICKKGFAGEDCSIKTCPKECHGRGDCVDGKCVCFVGFTGKDCSELTCPNDC
LDRGHCVDGQCVCHQGFTGEDCSEKTCPKNCHNRGRCVDGQCVCHQGFTGEDCHEKTCPE
NCHDRGRCVDGQCVCQEGFTGEDCSGKLCPKNCHDRGSCVDGQCVCQEGFTGEDCSEKTC
PKNCHDRGSCVDGQCVCHQGFAGEDCSEKTCPKNCLERGHCRDGVCVCFEGFTGLDCSAL
SCPEDCHHQGRCENGVCICDEGFMGEDCSEVSPPKDLTVVEVTPETVDLSWENEMRVTEY
LITYVPTAPGGLELDMRVPGDQKEATIQELEPGVEYLISVYAVLSNKKSVPVSARVATHL
PEPEGLKFKSVRETSVEVQWDPLDIPFDGWNLIFRNTKEEDGEILNSLGRPETTFEQSGL
GPGQEYEVKLEVVKNKKRGPPASKSIVTMIDAPGQVDVRDVTDTTALVTWFHPVAHVDGV
SVSFGPSLNPADRNMVELSSADTQYHLAGLSPDTQYEVSLTAKRGEQSSIPVYDSFLTDL
DAPRDLQTVEITDESITLEWRNSKAQVDQYRIKYGPLSGGDHGELLFPPGARDSTQAKIA
GLRPGTEYGMGVTAVTDERESLPTTTNAVTALDAPRDLTVAEVTETTMMLEWKRPLAKLD
SYRLVYVSADGQRAEDSVPGGSESHTLRGLNPGMMYTVSVTAERGRRSSVPASVSAATDL
GSPKGIRFSGVTDTSATVHWLTPRARVDNYQVTYMPAHGGVAKTLTVDGSQSLTLLPNLT
PGVTYEVTIVAVKEQRESEPGSDSVTTALDKPRGLTAVNITDTEALLLWQPAIATVDGYV
ITYSADSVTPVMERVSGNVVEFEMSSLKPATFYTVKVYAVRDLAKSAATTTEFTTDVDAP
QDLAATNIQTESAMLSWKPPRADISGYLLHFESAVGTIHEVVLSPTAVSYNMADLSASTE
YSVKLEALAGPKRSQVISTVFTTTGVLYRHPRDCSQALLNGDASSGMHTIYLGGDENQPL
QVYCDMSTDGGGWIVFLRRQSGRLEFFRNWKNYTAGFGDMSDEFWLGLSNLHKITSGGQY
ELRVDLRDKGEMAFAQYDKFSVSEPRTRYKVHVGGYSGNAGDSMTYHHGRPFSTYDHDND
IAVTNCALSYKGAFWYKNCHRVNLMGRYGDNSHSKGVNWFHWKGHEHSIEFAEMKIRPSN
FRNLEGRRKRS
NT seq
4896 nt
NT seq
+upstream
nt +downstream
nt
atgggaacgaatggtttcctcttgagctgcctcaccacagccgtactaatccaactctcc
accgccggcctggtcatccgccaccggagggagaccctgatgcccaagaaaacccaagag
aacctgactctcccccatcccgatcagcctgtcgtgttcaaccacgtctacaacatcaac
gtcccctccacctcgctctgcactgtggacctcgactcgtctggagggggcggtgtcaag
cacaagagcgcctcgatggacatgcagagcaccgaacacatggagcacacggtcgatggc
gacaaccagattgttttcactcaccgtatcaacatccccaaacaagcctgtggctgtgac
aaccagctgccggacatcaaagacatcctgaacagactggagatgttggagtctgagctg
tctagtctgagggagcagtgcaccagtggagccggctgttgtggagctcaggctacagga
gaggtgtccacaaagccattctgtaacggacgtggaaactggagcacggagacctgcagc
tgctcctgcgaaccaggatggaagggccccaactgcacggagccagagtgccccaatgac
tgccaggaccagggtcgctgtgtggatgggagatgtgaatgctttgagggtttcggcggg
gatgactgtggtgttgagctctgcctgctggactgtggcgactacggtcactgtgttgaa
gggtcctgtctttgtgaagaaggcttcattggcgaagactgttctcagactaactgcctt
aacaactgcctgggtcgtggacgctgtgtcgatgacgagtgcatttgtgatgagccatgg
acgggctttgactgctctgagctcatctgtcctaacgactgcttcgaccgaggacgctgc
atcaacggaacctgcgaatgtgaagagggattcactggagatgactgtggagagctcagc
tgtcgtgaaaactgcagcaaacatggcgtgtgtgtgaacggccaatgtaagtgtcagata
aactacggtggagaggactgctcaaagcttctctgtccccaaaactgcaatgagagaggc
cattgctttaatgggaagtgcatatgtgatcctggctttgaaggtgacgattgctcagtt
ctctcatgccttgacaactgcagcaacaggggtcagtgcattaacggagaatgcgtttgc
gacataggatatgaaggggaagactgcagtgagctctcctgccccaacaactgccaagaa
cagggccgctgtgttgatgggcaatgcatatgtaagaaaggctttgcaggtgaagactgc
agtatcaagacatgtcccaaagaatgccatggaagaggggattgcgtagacggaaagtgt
gtgtgttttgtgggttttacaggaaaagactgcagcgaactgacctgcccgaatgactgc
ttggaccgcggtcattgtgtggacggccagtgtgtttgccaccagggtttcactggtgag
gactgcagtgagaagacatgccccaagaactgccacaacagaggccgctgtgtagacggt
cagtgtgtttgccaccagggtttcacaggcgaagactgtcatgaaaagacatgccctgag
aactgccacgacagggggcgctgtgtggacggccagtgcgtttgtcaggaagggttcaca
ggcgaagactgcagtgggaagttgtgcccgaagaactgccacgacagaggcagctgtgta
gatggccagtgcgtttgtcaggaaggtttcacaggtgaagactgcagtgagaagacgtgc
ccgaagaactgccacgacagaggcagctgtgtagacggccagtgtgtttgtcaccagggt
tttgctggcgaagactgcagtgagaagacttgccctaagaactgcctagagagaggtcac
tgcagagacggtgtctgtgtatgttttgaaggtttcacagggctggactgctctgcgctg
agctgtccagaagactgccaccaccaggggcgctgtgaaaatggagtatgcatctgtgac
gaaggcttcatgggagaggactgctctgaagtctcgccacccaaggacctcactgttgtg
gaggtgactcctgagacggtggacctctcctgggagaatgagatgcgagtgacagagtac
ctgatcacctacgttcccacagcccctggcggtctggagctcgacatgcgggtgcctggg
gaccagaaggaggccaccattcaggagcttgagcctggtgtggagtacctgatcagtgtc
tatgctgtactcagcaacaagaagagcgttcctgtcagcgctcgcgtggcaacacatctc
cctgagcccgagggtcttaagtttaagtcagttcgagagacgtcagtggaagtgcagtgg
gaccccctggatatcccatttgatggatggaacctcatcttcagaaacacaaaagaggag
gatggtgagattctcaactccctcggccggccggagaccaccttcgagcagtcgggtctg
ggtccaggccaggagtacgaggtcaaactggaggtggtgaagaacaaaaagcgtgggccg
cctgcctcgaagagcatcgtcacaatgatcgatgcccccggccaggtggatgtgcgagac
gtgacggacaccacggcactggtcacctggttccatcctgtggcccacgtggacggggtc
agcgtctccttcggacccagcctgaacccagcggatcgtaacatggtggagctgtcatct
gctgacacccagtaccacctggctggcctcagccctgatacgcagtacgaggtgtctctg
acggcaaagagaggggagcagagcagcatacctgtgtatgactccttcctcacagacctg
gatgctcccagagaccttcagacggtggaaataacagatgagagcatcactctggagtgg
aggaacagtaaggctcaggtggaccagtaccgcatcaagtacggcccgctgtctggaggc
gaccatggagaactgctcttcccgcccggagccagggactccacccaggccaaaatcgcc
ggcctgagaccggggacggagtacgggatgggagtaaccgcggtgacagatgagcgggaa
agtctgcccaccaccaccaacgcagtcacagccctggacgcccccagagacctgactgta
gcagaggtgacagagaccaccatgatgctggagtggaagcggccactggccaagctggac
tcctaccggctggtctacgtgtcggctgacggtcagagggctgaagactcggtccccggc
ggctcagagtctcacaccctgcggggcctgaaccccggcatgatgtacaccgtcagcgtc
accgccgagaggggccgcaggagcagcgtgcccgcctctgtctcagctgccacagacctg
ggctcaccaaagggcatccgcttctccggagtgaccgacacgtcggccaccgttcactgg
ctgactccaagagctcgggtggacaactaccaggtcacctacatgcctgcccatggaggt
gttgcgaagacgctgacggtggacggctcgcagtcgctcaccctgctgcctaacctgacc
cctggggtcacctatgaggtcaccatcgttgccgtgaaggaacagagggagagtgagcct
ggctctgacagcgtcaccacagctctggataagccccgtggactgactgcagtcaacatc
acagacactgaggccctgctgctgtggcaacccgccatcgcaactgtagacggttatgtc
atcacatacagcgcagattctgtgactccagtgatggagcgtgtgtctggaaacgtggtg
gagtttgagatgagctcactgaagccagctacattctacactgtgaaggtctacgcggtg
agggacttggccaagagtgcagccaccacaacagagttcaccacagatgtagacgctcct
caggacctggcagccaccaacatccagacggagagcgccatgctctcctggaagcctccc
cgggccgacatcagcggctacctcctccacttcgagtctgctgttgggaccatccacgag
gtggtcctgagccccaccgctgtgtcatacaacatggccgacctcagcgcatcgacagaa
tattcagtgaaactggaagctctcgctggtcccaagaggagccaagtcatctctaccgtc
ttcaccactaccggcgtgctgtacagacaccccagagactgctcacaggccctgctgaac
ggcgacgcctcatcaggcatgcacactatctacctgggtggagacgagaaccaaccgctg
caggtctactgcgacatgagcaccgacggaggcggatggatcgttttcctgcgacgtcag
agtggcagactggagttcttccgcaactggaagaattacacggctggttttggtgacatg
agcgatgagttctggcttggtctgtccaacctgcataagatcacatctggaggccagtac
gagctgcgggtcgacctgagagacaagggagagatggccttcgctcagtacgacaagttc
tccgtctcagaacctcggacccgctacaaagtccatgtgggaggatacagtggcaatgca
ggtgactctatgacctaccaccacggccgtccgttctccacctacgaccacgacaacgac
attgccgtgaccaactgtgctctgtcctataagggggccttttggtacaaaaactgtcac
cgggtcaacctgatgggtcgctatggagacaacagccacagcaagggtgtaaactggttc
cactggaaaggccacgaacactccatcgagttcgccgagatgaagatccgtccgtccaac
ttcagaaatctggagggaaggaggaaacggtcttaa
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