Xiphophorus maculatus (southern platyfish): 102228067
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Entry
102228067 CDS
T02923
Name
(RefSeq) lysine-specific demethylase 2B-like isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
xma
Xiphophorus maculatus (southern platyfish)
Pathway
xma03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
102228067
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
xma03000
]
102228067
04121 Ubiquitin system [BR:
xma04121
]
102228067
03036 Chromosome and associated proteins [BR:
xma03036
]
102228067
Enzymes [BR:
xma01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
102228067
Transcription factors [BR:
xma03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
102228067
Ubiquitin system [BR:
xma04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
SCF complex
Target recognizing subunit (F-box)
102228067
Chromosome and associated proteins [BR:
xma03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
102228067
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
102228067
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
F-box
PHD
C1_1
LRR_4
Motif
Other DBs
NCBI-GeneID:
102228067
NCBI-ProteinID:
XP_023199697
Ensembl:
ENSXMAG00000015174
LinkDB
All DBs
Position
12:24673042..24686586
Genome browser
AA seq
796 aa
AA seq
DB search
MALSMSGDDEEYESESEQQRAVNRPKPKMGSTSAVKLPSNRSASGARRRRTRCRKCEACL
RTECGECHFCKDMKKFGGPGRMKQSCIMRQCIAPVLPHTAVCVVCKEAGKEDTLEDEEEK
FNFMLMECSICNEIVHPNCLKVSDASGVVNDELPNCWECPKCNHAGKSGKVLKQKRGPGF
KYASNLPGSLLREQKPAKEEGDLSSATKRKPDRDETPRYRTEEALHRQPPLLSPSGLPRP
RPEDKLRKKRKLFDDDDEEDLNVRKKFATNYVGDISKHVEESYLDKSDDSYISKLLPQVK
TEKEEEDDDDEEGGREHPFRSGVDRKGRFGEAEEDGDYRDSRNDSLNSSIKTPLGDSDHS
LCSSPQAGPSSEGGSETQERGPRPKARRKRRLPNRELSRELSKALNQEIQKTEDCLANEN
RQPLKVEPETENEEPKKLFRNGNELGDQRSHLKTKEMNGNTWDLRHFYPSQITPLGFNRS
TPTTRPVPPRSPPKCVQMERHVIRPPPISPPPDRLPLKDGKAHILQREVWMKIFGYLSHQ
ELCVCMRICKTWNRWCCDKRLWTNIDLNRCTSITPLMLSGIIRRQPVSLDLSWTNISKKQ
LSWLINRLPGLRVLKLSGCSWAAVSALCTSSCPLLRTLDVQWVEGLKDAQMRDLLSPPTD
NRPGQLDNRCKLRNVEDLRLAGLDITDTSLRLISRQMPLLSRLDLSYCNHINDQSVNLLT
AAGTTTRDSLTEINLSVCNRVTDHSLNYFKRCGSICQIDLRFCKQVTKTACEHFIAEMSV
SVPFRLKEDKLLQKIS
NT seq
2391 nt
NT seq
+upstream
nt +downstream
nt
atggccttgtcaatgagcggagacgatgaagaatatgagtcagagtccgagcagcagcga
gcagtcaaccgtccgaagccaaagatggggtcaacgtcggccgtcaagctgccgtccaac
cggagcgcgtcgggagccaggcgcaggagaacgcgctgccggaagtgcgaggcgtgtctc
cgcacagaatgcggagagtgccacttctgcaaggacatgaagaagtttggggggccgggg
cgcatgaagcagtcctgcatcatgaggcagtgcatcgcgcccgtcctgccccacacagcc
gtgtgtgtggtgtgtaaagaggcggggaaggaggacacgctggaggacgaagaggaaaag
ttcaacttcatgctaatggagtgctccatctgcaacgagatcgttcaccccaactgcctc
aaggtgagtgacgcctcaggtgtggtgaatgatgaactgcctaactgctgggaatgtccc
aaatgcaaccacgcaggaaaaagtggaaaagtattgaagcaaaaaaggggccccgggttc
aagtacgcctccaacctccccggctctttgctgagggaacagaaacccgcaaaggaggag
ggggacctttcctctgcgacgaagaggaagccggacagagacgagacgccaagatacaga
actgaggaggctctccatcggcagccgccgctgctgtcccccagcggcctgccgaggccc
agacccgaggacaaactgaggaagaagaggaagcttttcgatgatgatgacgaagaggac
ctcaatgtgaggaagaagtttgccacaaactatgtaggcgacataagcaaacatgtggaa
gaaagttatctggacaagtcagacgattcgtacatttctaaacttctaccccaagtcaag
acggaaaaggaggaggaagatgatgatgatgaagaaggcggaagggagcatcctttccgc
agcggcgtggacaggaaagggcgcttcggagaggccgaagaggatggtgactacagagac
tccagaaacgactcgttgaattcttccatcaaaaccccacttggagacagcgaccactct
ctctgcagctctccgcaggccggccccagcagcgaggggggcagcgagacgcaggaaagg
gggccccgtccgaaggctcgccgtaaacggcgtctgcccaacagggagctgagccgagaa
ctgagcaaagcactgaaccaggaaatccagaagaccgaggactgcctggccaacgagaac
aggcagccgctcaaggtggagccagagacagagaacgaggagccaaagaagctgttccgc
aacggtaacgaacttggcgaccagaggtcccacctcaagaccaaagagatgaacgggaac
acctgggatttgcgccacttttacccaagtcagatcactcccctgggcttcaaccggagc
accccgaccacgcggccggtgccgccgcgctcccctcccaagtgcgtccaaatggaaagg
cacgtaatccggccgcctccgattagcccgcctcccgacagactgcccctgaaagacggg
aaagcacacatcctccagcgcgaagtctggatgaagatattcggctatctgtcacaccag
gagttgtgtgtctgcatgagaatctgcaagacgtggaaccgatggtgttgtgacaagaga
ctttggacaaacatcgatttaaaccgctgcacctccatcacaccgctcatgctcagcggg
ataatccgcaggcagccggtctccttggacctcagctggacgaacatttccaaaaagcag
ctgagctggctcattaatagattaccaggtctgcgagtgttaaagctgtcgggttgttcc
tgggctgctgtctctgcactctgcacgtccagctgccccctgctgcgcactctggatgtc
cagtgggtggagggactcaaagacgcacagatgagggatctcctttcaccacccacagac
aacagaccaggtcagctggataatcgctgcaagctgcggaacgtggaggacctgcggctg
gcagggctggacatcaccgacacgtccttgcgtctcatcagtcggcagatgcctctgctg
tccaggctagacctgagctactgcaaccacatcaacgaccagtctgtgaacctgctcact
gcagcaggaactacaaccagagactcactcacagaaatcaacctatcagtttgtaacaga
gtcacggatcattcattgaactatttcaagcgctgcggcagcatctgccagatcgacctt
cgcttctgtaagcaggtgaccaagacggcctgtgagcacttcattgcagagatgtctgtg
agcgtcccgttcagactgaaagaagacaagctgctgcagaagataagctag
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