Xiphophorus maculatus (southern platyfish): 102235782
Help
Entry
102235782 CDS
T02923
Name
(RefSeq) DNA mismatch repair protein Msh3 isoform X1
KO
K08736
DNA mismatch repair protein MSH3
Organism
xma
Xiphophorus maculatus (southern platyfish)
Pathway
xma03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
102235782
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xma03400
]
102235782
DNA repair and recombination proteins [BR:
xma03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
102235782
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_II
MutS_IV
Mo-nitro_C
MACPF
Motif
Other DBs
NCBI-GeneID:
102235782
NCBI-ProteinID:
XP_005795118
Ensembl:
ENSXMAG00000016720
LinkDB
All DBs
Position
12:complement(15541207..15587983)
Genome browser
AA seq
1112 aa
AA seq
DB search
MPKSAKKPCTTQTSISRYFGGLSSSSRPQSGIKPNLAEHRLSRGKLKLSSGDEDGLPSKR
TKLAVKDQQVEDVPCEPRPSQSVKEAKPTLSRGGGLCSSTLEKLKGFSCMADPFLRVIQD
ETKMDDRSGKSSNTRSSVSPSFPDSHQQISNILPGIEKERDYETQDRKEEEDPDLAATNQ
GFCLSKITKSGGGEGGKVAESPSDSSAPCRRSRSTYTPLEQQVLELKQQQKDVLLAVECG
YKYRFFGEDAEIAAKELNITCHLDHNFMTCSIPTHRLFVHVRRLVSHGHKVGVVKQTETS
ALKASGTNRNALFSRQLSALYTKSTLVGEDVNPVCRVADVEEGGCADVVSDPPDSFLLCI
SENWDKVKKQLSVGVVAVQPSTGDVLLDCFPDGPSRSELESRILRINPVEVLVPSDLSEQ
TSKLLLSIANASAQTDDRVRVERRDSAEFEFTSAMNTVVKFYCHTPEKDSRSLSSVASFD
SPVICCLGPLIQYLQEFNLEKVLRNESSFRHLSSESGGMKLSAATLRNLEILNNQTDGSV
RGSLLWVLDHTHTPFGRRLLRKWVSQPLTEPQCIAERQDAVQEMMESDSITLNSIRSLLS
HLPDLERGICSIYHGKSSTQEFFLICSSLSRLGLELQALLPAVQSQIRSSLLRSLLLDTP
DLLAPAHGFLKVLNEKAAKSGNKTELFSDLSGFPMLQDRMSQIQSVLAEIQAHRKEVRLV
LKAPALDYVTVSGQEFLIEVKNSLSSIVPPDWVKISSTKTVSRYHSPFLVERYKKLQQLR
EQLLLDCQREWTRFLDQFGEHYHTMKRAISHLATTDCLLSLAEVAKQGNYCRPKVCENNH
QIMITDGRHPAIDLLMGEHSQYVPNHTALQHDGKRTMIITGPNMGGKSSYIRQVALICVM
AQIGSYVPACEACLGVLDGIYTRMGASDNIFKGRSTFMEELTEASEIISQATECSLVILD
ELGRGTSTHDGIAIAYATLECFIKDVKSFTLFVTHYPPLCELEQVYPQHVSNFHMAFLLN
EPDVTTDADDGEVQPEFITFLYQLTEGAAGRSYGLNVARLADVPDPILHTASRKARELEL
MVNARRKYQKLLSALWRICDKSSLEKWLQSNS
NT seq
3339 nt
NT seq
+upstream
nt +downstream
nt
atgccaaagtctgcgaaaaagccctgcactacgcagacctccatcagcaggtactttgga
ggactgagcagcagcagcagacctcagtctgggattaaaccaaatcttgcagagcatcgg
ctctcaagagggaagttgaaactttcctctggtgatgaagatgggttgccatcaaaacga
accaaactggctgtgaaggaccaacaggtggaagacgtgccgtgtgagcccagaccttct
cagagtgttaaagaggcaaagccaacattgagccgaggaggaggtctctgctcctctact
ttggagaagctgaaaggtttctcctgcatggctgatccgtttctaagggtcatccaggat
gaaacaaagatggatgaccgcagcggcaaaagctctaatacgaggagttctgtttcgcct
agttttcccgattctcatcagcaaatcagcaacatactgcctgggatagagaaggagcgg
gattatgaaacacaggatcgtaaagaagaagaggatccagacctggctgccactaatcag
ggattttgcttgtctaagatcacaaagtcaggaggaggggagggaggcaaggttgcagag
tcaccgtcggattccagcgccccctgcagacgctccagaagcacatacacccccctggag
cagcaagtcctggagctgaaacagcaacaaaaggatgtcctgttggcagtggaatgtggc
tataaatacaggttctttggagaagatgcagagattgctgcaaaagagctgaacataact
tgtcacctggatcataacttcatgacgtgcagcatcccgactcatcgcctgtttgttcac
gtcaggcgcctggtgtctcatggacacaaggttggtgttgtgaaacagacagaaacatct
gcgctgaaggcgtcagggaccaacagaaatgctctgttcagccgtcagctcagcgcgttg
tacaccaagtccactctggtgggagaggacgtaaacccggtctgcagagtggcagacgtg
gaggaggggggctgtgctgacgtggtgtctgaccctcctgacagcttcctgctgtgtatc
agtgagaactgggacaaagtgaagaagcagctctccgtgggggtggtggcggtccagccc
agcactggagacgtgttgctggactgttttcctgatggtccgtctcgctccgagctggag
agccgtatcctgaggataaacccagtggaggttctggtgccttcggatctttcagaacaa
acctccaaactgctgctcagtatcgctaatgccagtgctcagactgatgaccgagtcaga
gttgagagaagggacagcgctgaatttgagttcacctccgcaatgaacacagtcgtcaaa
ttctactgtcacaccccggagaaagactcgcgctctctgtcgagtgtggcctccttcgac
agcccggtcatctgctgcctggggccgctcattcagtacctccaagaattcaatctggag
aaggttcttagaaatgaaagctcatttcgacatctgtccagtgaatcagggggaatgaag
ctgagtgctgccactctcaggaacctggaaatcctcaataatcagacagatggcagtgtg
aggggtagtctgttgtgggtgttggaccacactcacactccgtttggacggagactgctg
aggaagtgggtcagccagccgctcacagagccgcagtgtatagcagaaagacaggatgct
gtgcaggaaatgatggagtcagactcaataactctgaactccatcagatctcttctgtca
catttgcctgatctggagagaggcatctgcagcatatatcatggaaagtcttccacgcag
gagtttttcctcatctgtagcagtctttctcgccttgggctggaactgcaggctcttctt
ccagctgtccagtcgcagatccgctcctcgttgctccggagcctcttattggacactcct
gacctactggctccggcccatggcttcctcaaggtgctgaatgagaaagcagcaaagtcg
gggaataagacggagctcttctcagatttgtctggcttcccgatgctgcaggacaggatg
agccaaatccagtctgtcctcgctgaaattcaagcccaccgcaaagaggtccggttggtg
cttaaggcccctgcgctcgattacgtcactgtttctggacaggagtttctgattgaggtg
aagaactcattgtcatcaatcgttccacctgactgggtcaaaatcagcagcacgaagact
gtcagcaggtatcactctcctttcctggttgaacggtacaagaagctgcagcagctccga
gagcagctgctgctagactgccagagggagtggacccgatttctggatcagtttggggag
cactaccacaccatgaaaagagctattagtcacctagcaaccacggactgcctcctttca
ttggctgaggtggccaaacaagggaattattgcaggccaaaggtgtgtgaaaataatcac
cagataatgatcactgatggcagacatcctgcgatagatttattgatgggagagcacagc
cagtatgttcccaaccacactgcattacagcatgacggcaagagaacgatgataatcaca
gggcccaatatgggaggcaagagctcctacatccgccaggtcgcccttatttgtgttatg
gcccagataggctcgtacgtcccagcgtgtgaggcttgtctgggcgtactggacggtatt
tacactaggatgggggcttcggacaacatcttcaaaggccgcagcacgttcatggaagag
ttgacggaggcctcagagatcatatctcaagcaacagaatgctcgttggtcatcctcgat
gaactcggacggggcacaagcactcatgacgggattgccattgcctacgctaccctggaa
tgcttcatcaaagatgtgaagtccttcaccttgtttgtgacccattatcctcctctgtgt
gagttggagcaggtgtatcctcaacatgtgtccaactttcacatggctttcttacttaat
gagcctgacgtcacaactgacgctgatgatggagaggttcagccagagttcatcaccttc
ctctatcagttaaccgaaggagctgctgggcgaagctacggcctgaatgtggcccgactg
gctgacgttcctgacccgatactacacaccgcctctcgtaaagcccgagagctggagctc
atggtcaatgccaggaggaagtatcagaaacttctctcagctctttggcgcatctgcgac
aaatcctccctcgaaaagtggctgcagtcaaactcttga
DBGET
integrated database retrieval system
