Xanthomonas oryzae pv. oryzae MAFF 311018: XOO2587
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Entry
XOO2587 CDS
T00360
Symbol
XOO2587
Name
(GenBank) conserved hypothetical protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
xom
Xanthomonas oryzae pv. oryzae MAFF 311018
Brite
KEGG Orthology (KO) [BR:
xom00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
XOO2587 (XOO2587)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xom03400
]
XOO2587 (XOO2587)
Enzymes [BR:
xom01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
XOO2587 (XOO2587)
DNA repair and recombination proteins [BR:
xom03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
XOO2587 (XOO2587)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_N
Motif
Other DBs
NCBI-ProteinID:
BAE69342
LinkDB
All DBs
Position
complement(2885758..2886108)
Genome browser
AA seq
116 aa
AA seq
DB search
MSLSKYRRKRSFAKTRELEPGKALPPGQRAIFVVQLHHASRRHYDFRLQVGDALKSWAVP
NGPSYDPQGQAHGDGGRRPPGRLRQLRGRDSQGLRRCARAGRAAAIHRHRHQAPAH
NT seq
351 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgagcaagtaccgccgcaagcgcagcttcgccaagacccgcgagctggagccg
ggcaaggccttgccaccagggcagcgcgcgatcttcgtggtgcagctgcatcacgccagc
cgtcgccactacgatttccgcctgcaggtgggcgatgcgctcaagagctgggcggtgccc
aacgggccaagctacgacccccaaggtcaagcgcatggcgatggaggtcgaagaccaccg
ggtcgattacgccagcttcgagggcgagattcccaagggcttcgccgatgcgctcgcgca
ggccgagccgcagcgattcatcgccaccgccaccaagcgcctgcgcactaa
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