Xanthomonas oryzae pv. oryzae KACC 10331: XOO0004
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Entry
XOO0004 CDS
T00235
Symbol
gyrB
Name
(GenBank) DNA gyrase subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
xoo
Xanthomonas oryzae pv. oryzae KACC 10331
Brite
KEGG Orthology (KO) [BR:
xoo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xoo03032
]
XOO0004 (gyrB)
03400 DNA repair and recombination proteins [BR:
xoo03400
]
XOO0004 (gyrB)
Enzymes [BR:
xoo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
XOO0004 (gyrB)
DNA replication proteins [BR:
xoo03032
]
Prokaryotic type
DNA Topoisomerases
XOO0004 (gyrB)
DNA repair and recombination proteins [BR:
xoo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
XOO0004 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
GyrB_insert
DNA_gyraseB_C
Toprim
HATPase_c
GyrB_hook
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
AAW73258
UniProt:
Q5H712
LinkDB
All DBs
Position
5045..7669
Genome browser
AA seq
874 aa
AA seq
DB search
MRYCTGSTWNTVRSHCKPPRTELNGPGRPTGIICFAIPPFSTVRSGCGRLCLCCGANGTR
MTDEQNTPPTPNGTYDSSKITVLRGLEAVRKRPGMYIGDVHDGTGLHHMVFEVVDNSVDE
ALAGHADDIVAKILVDGSVAVSDNGRGVPVDIHKEEGVSAAEVILTVLHAGGKFDDNSYK
VSGGLHGVGVSVVNALSEHLWLDIWRDGFHYQQEYALGEPQYPLKQLEASTKRGTTLRFK
PSAAIFSDVEFHYDILARRLRELSFLNSGVKITLIDERGEGRRDDFHYEGGIRSFVEHLA
QLKSPLHPNVISVTGEHNGIVVDVALQWTDAYQETMYCFTNNIPQKDGGTHLAGFRAALT
RVLGTYIEQNGIAKQAKVALTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSSDVRPAVE
NAFGARLQEFLQENPNEAKAITGKIVDAARAREAARKARDLTRRKGALDIAGLPGKLADC
QEKDPALSELFIVEGDSAGGSAKQGRNRKNQAVLPLRGKILNVERARFDRMLASDQVGTL
ITALGTGIGRDEYNPDKLRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIG
LPPLYKLKQGKSELYLKDDAALNAYLASNAVEGAALIPATDEPPITGEALEKLLMLFTSA
NEAIARTAHRYDPALLTALIDLPPLDVETLQAEGNQHPALDALQAVLNRGTLGTARYQLR
FDPATENAPATLVAIRRHMGEEFTQVLPMGAFESGELRPLREVSLALHDLVREGAQIVRG
NKSHPITSFAQAHAWLLDEAKKGRQVQRFKGLGEMNAEQLWETTVNPDTRRLLQVRIEDA
VAADQIFSTLMGDVVEPRRDFIEDNALKVSNLDI
NT seq
2625 nt
NT seq
+upstream
nt +downstream
nt
gtgcgctattgcaccggttccacgtggaacacggtcaggtcgcactgcaagccccctcgg
actgagctcaacggcccgggtaggccgactggtataatttgcttcgctatcccccctttt
tccacggtgcgaagcggctgcggccgtctttgcctgtgttgtggagccaacggcacgcgc
atgaccgacgaacaaaacaccccgccaacacccaacggcacttacgactccagcaagatc
accgtgctgcgtggcctggaagccgtccgcaagcgccccggcatgtacatcggcgatgtc
catgacggcaccggcctgcatcacatggtgttcgaggtggtcgacaactcggtcgacgaa
gccctggccgggcatgccgacgacatcgtagcgaaaatcctggtcgatggctcggtggcg
gtgtcagacaacggacgcggcgtgccggtcgacattcacaaggaagaaggcgtgtccgcg
gccgaggtgatcctcaccgtgctgcatgccggcggcaagttcgacgacaacagctacaag
gtctccggcggcctgcatggcgtgggcgtttcggtggtcaacgcgctgtccgagcacctg
tggctggacatctggcgcgatggtttccactaccagcaggaatatgcgctgggcgagccg
cagtacccgctcaagcagctggaagcatcgaccaagcgcggcaccacgctgcgcttcaag
ccgtccgcggccatcttcagtgacgtcgagttccactacgacatcctggcgcggcgcctg
cgtgagctgtcgttcctcaattccggcgtcaagatcaccctgatcgacgagcgtggcgaa
ggccgtcgcgacgatttccattacgaaggcggcatccgcagcttcgtggagcatcttgcc
cagctgaagtcgccgctgcacccgaacgtgatctcggtgaccggcgagcacaatggcatt
gtggtggacgtggccctgcagtggaccgacgcctaccaggaaaccatgtactgcttcacc
aacaacatcccgcagaaggatggcggcacccacttggccggcttccgcgccgcgctgacg
cgcgtgctgggcacctacatcgagcagaacggcatcgccaagcaggccaaggttgcgctg
accggtgacgacatgcgcgaaggcatgatcgcagtgctgtcggtcaaagtgcccgacccc
agcttctcctcgcagaccaaggaaaagctggtcagctcggacgtgcgcccggcggtggaa
aacgccttcggtgcgcgcttgcaggagttcctgcaagagaacccgaacgaagccaaggcc
atcactggcaagatcgtcgatgccgcgcgtgcgcgcgaagccgcgcgcaaggcgcgcgac
ctcacccgccgcaagggcgcgctggatatcgccggcctgccgggcaagctggccgactgc
caagaaaaagatccggcgctgtccgaactgttcattgtcgagggtgactcggcaggtggc
tcggccaagcagggacgcaaccgcaagaaccaggcggtgctgccgttgcgcggcaagatc
ctcaacgtggaacgtgcgcgcttcgaccgcatgctggcgtcggaccaggtcggcacgctg
atcaccgcactgggcaccggcatcggccgcgacgagtacaacccggacaaactgcgctac
caccgcatcatcctgatgaccgacgccgacgtcgacggctcgcacatccgtaccctgttg
ctgaccttcttctaccggcagatgccggagctgatcgagcgcggctacatctacatcggc
ctgccgccgctgtacaagctcaagcagggcaagagcgagctgtatctgaaggacgatgcc
gcgctcaacgcctacctggccagcaatgcggtcgaaggtgcggcgctgattccggccacc
gacgagccgccgatcaccggcgaagcgctggaaaaactactgatgctgttcaccagcgcc
aacgaagcgattgcgcgcaccgcgcaccgctacgacccggctttgctgaccgcattgatc
gacctgccgccgctggatgtggaaacactgcaggccgaaggcaaccagcatccggccctg
gatgcgctgcaggcagtgctcaatcgcggcaccctgggcaccgcgcgctaccagttgcgc
ttcgacccggccaccgagaacgcgcctgccacgctggtggcgatccgccgtcatatgggc
gaagaattcacccaggtgctgccgatgggggcgttcgaaagcggcgagctgcgtccgctg
cgtgaggtatcgctggccctgcatgatctggtgcgtgagggcgcgcagatcgtgcgcggc
aacaagagccacccgatcaccagcttcgcgcaggcgcacgcctggctgctggacgaggcc
aagaagggccgccaggtccagcgcttcaagggcctgggcgaaatgaacgccgagcagctg
tgggaaaccaccgtcaaccccgacacccgtcgcctgttgcaggtgcggatcgaggatgcg
gtggccgccgaccagatcttcagcaccctgatgggcgatgtggtcgaaccacgccgcgat
ttcatcgaggacaacgcgctgaaggtgtccaacctggatatctga
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