KEGG   Xanthomonas oryzae pv. oryzae PXO99A: PXO_04529
Entry
PXO_04529         CDS       T00763                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
xop  Xanthomonas oryzae pv. oryzae PXO99A
Pathway
xop03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:xop00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    PXO_04529 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:xop03021]
    PXO_04529 (rpoC)
   03400 DNA repair and recombination proteins [BR:xop03400]
    PXO_04529 (rpoC)
Enzymes [BR:xop01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     PXO_04529 (rpoC)
Transcription machinery [BR:xop03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     PXO_04529 (rpoC)
DNA repair and recombination proteins [BR:xop03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      PXO_04529 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Apocytochr_F_C
Other DBs
NCBI-ProteinID: ACD57879
UniProt: B2SQQ2
Structure
LinkDB
Position
1246246..1250463
AA seq 1405 aa
MKDLLNLFNQQRQTLDFDAIKIALASPDLIRSWSYGEVKKPETINYRTFKPERDGLFCAA
IFGPIKDYECLCGKYKRMKHRGVVCEKCGTEVTLAKVRRERMGHIDLASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFEAYVVTEPGLTPLERRQLLTEEQYLTARQEYNDDFDAAM
GAEAVYELLRTIDLQSEMTRLREEIASTGSETKLKRLTKRIKLIEAFLESGNRPEWMVMT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLRRLLELNAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGTNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LKLHQCGLPKKMALELFKPFVFAKLQRRGLATTIKAAKKLVEREEAEVWDILEEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMSRALENKKGEGMVFANTSEVKRAYDNR
VVELHAKVKVRITQVDVDAVDGKRTSGTSIVDTTVGRALLSEILPEGLPFQLANTEMTKK
NISRLINSSYRLLGLKDTVVFADKLMYTGYAYATRAGVSIGIDDMLIPDEKKGILTEAEA
EVLEIQEQYQSGLVTAGERYNKVVDIWSRTSERIAKAMMDTIGTEKVENAKGETIDQKSM
NSLYIMADSGARGSQAQIRQLAGMRGLMARPDGSIIETPIKANFREGLNVQEYFNSTHGA
RKGLADTALKTANSGYLTRRLVDVAQDVVITEIDCGTTEGLIMTPIVEGGDVVEPLKERV
LGRVVAEDVYLPGNDEEPIVTRNTLLDEAWVAKLEDASVQSVKVRSTISCESSFGVCARC
YGRDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAVDNITVKTTGSV
KFNNLKSVAHASGSLVAVSRSGELSVLDGHGRERERYKLPYGATITAKDGDAVKAGQSVA
NWDPHNHPIVSEVAGFIRFIDFVDGVTVIEKTDELTGLASREITDPKRRGAHAKELRPIV
RIVDGKGNDLTIPNTDLPAQYLLPPRSIVNLQDGAAVGVGDVVAKIPQEASKTRDITGGL
PRVADLFEARKPKDPAILAERSGIISFGKDTKGKQRLIIKDTDGSEHEELIPKYRQIIVF
EGEHVTKGETVVDGEPSPQDILRLLGVEPLAAYLVKEIQDVYRLQGVKINDKHIEVITRQ
MLRKVEIVDQGNSKFLNGEQVERQRVIEENARLVKRNELPAKYDPVLLGITKASLATESF
ISAASFQETTRVLTEAAVRGTRDNLRGLKENVIVGRLIPAGTGLAYHAGRRKASGLTDSE
METLSGKPAGAEPVAALADAGADEE
NT seq 4218 nt   +upstreamnt  +downstreamnt
atgaaagacctgctcaacctcttcaatcagcagcgccagacgctggatttcgacgcgatc
aagatcgcgctggcgtcgccggacctgattcgttcgtggtcctacggcgaagtgaagaag
cccgaaaccatcaactaccggaccttcaagcccgagcgtgacggcctgttctgcgccgcc
atctttggaccgatcaaggactacgaatgcctgtgcggcaagtacaagcgcatgaagcac
cgtggcgtggtctgcgaaaagtgcggcaccgaagtcaccctggccaaggtgcgccgcgag
cgcatgggtcacatcgatctggcctctccggtcgcgcacatctggttcctcaagtcgctg
ccctcgcgcatcggtttgatgctggacatgaccctgcgtgacatcgagcgcgtgctgtac
ttcgaagcctacgtcgtcaccgagccgggcctgaccccgctcgagcgccgccagctgctg
accgaagagcagtacctgaccgcacgccaggagtacaacgacgacttcgacgccgccatg
ggcgccgaggccgtgtacgagctgctgcgcacgatcgacctgcagtcggaaatgacccgg
ctgcgcgaggaaatcgccagcaccggttcggaaaccaagctcaagcgcctcaccaagcgc
atcaagctgatcgaagccttcttggaatcgggcaaccgtccggagtggatggtcatgacc
gtgcttcccgtgctgccgccggacctgcgtccgctggtgccgctggatggcggccgcttc
gcgacctcggatctgaacgatctgtaccgccgcgtgatcaaccgcaacaaccgtctgcgc
cgcctgctcgagctcaatgcgccggacatcatcgtgcgcaacgaaaagcgcatgctgcag
gagtcggtcgatgcgttactggacaacggccgtcggggccgtgccatcaccggcaccaac
aagcgtccgctgaagtcgctggccgacatgatcaagggcaagcagggccggttccgtcag
aacctgctcggcaagcgcgtggactactccggtcgttcggtcatcaccgtcggtccgtac
ctcaagctgcaccagtgcggcctgccgaagaagatggcgctcgagctgttcaagccgttc
gtgttcgccaagctgcagcgtcgtggcctggcgaccaccatcaaggccgccaagaagctg
gttgagcgcgaagaagccgaagtctgggacatcctggaagaagtgatccgtgagcatccg
gtgctgttgaaccgtgcgccgaccctgcaccgtctgggcatccaggcgttcgagccggtg
ttgatcgaaggcaaggccatccagctgcatccgctggtgtgtaccgccttcaacgccgac
ttcgacggcgaccagatggctgtccacgtgccgctctcgctggaagcccagctggaagcg
cgtgcgctgatgatgtccaccaacaacatcctgtcgccggccaacggcgagccgatcatc
gtgccgtcgcaggacgtggtgttgggcctgtactacatgagccgcgcgcttgagaacaag
aagggcgaaggcatggtgttcgccaacaccagcgaagtgaagcgcgcctacgacaaccgt
gtggtcgaactgcacgccaaggtcaaggtccgcatcacccaggtggacgtggacgccgtc
gatggcaagcgcaccagcggcacctcgatcgtggacaccacggtcggtcgtgcgctgctg
agcgaaatcctgcccgaaggcctgccgttccagctggccaacaccgagatgaccaagaag
aacatctcgcgtctgatcaactccagctaccgtctgctgggcttgaaggacacggtcgtg
ttcgccgacaagctgatgtacaccggctatgcctatgcaacccgtgccggcgtgtcgatc
ggtatcgacgacatgctgatcccggacgagaagaagggcatcctcaccgaggccgaagcc
gaagtgctggaaatccaggagcagtaccagtccggtctggtcaccgccggcgagcgctac
aacaaggtcgtggacatctggtcgcggaccagcgagcgcatcgccaaggcgatgatggac
accatcggtaccgaaaaggttgagaacgccaagggcgagaccatcgaccagaagtcgatg
aactcgctgtacatcatggccgactccggtgcgcgtggtagccaggcgcagatccgtcag
ctggccggtatgcgcggcctgatggcgcgtccggacggctcgatcatcgagacgcccatc
aaggcgaacttccgcgaaggtctgaacgtgcaggagtacttcaactccacccacggtgcc
cgtaagggtctggccgataccgcgctgaagaccgcgaactcgggttacctgacccgtcgt
ctggtcgacgtggcgcaggacgtggtgatcaccgaaatcgattgcggcaccaccgaaggg
ttgatcatgaccccgatcgtggaaggtggcgacgtggtggagccgttgaaggagcgcgtg
ctgggccgtgttgtggccgaggacgtctacctgccgggcaacgacgaagaaccgatcgtc
acccgcaacacgctgctcgacgaagcctgggtcgccaagctcgaagacgccagcgtgcag
tcggtgaaggtgcgttcgaccatcagctgcgaatcctccttcggcgtgtgtgcacgctgc
tacggccgcgatctcgcacgtggtcaccaggtcaacatcggtgaagcggtcggcgtcatc
gccgcgcagtcgatcggtgagccgggtacccagctgaccatgcgtacgttccacatcggt
ggtgcggcatcgcgtgcggctgcggtggacaacatcactgtcaagaccaccggttcggtg
aagttcaacaacctcaagtcggtggcgcatgccagtggctcgttggttgcggtctcgcgt
tctggcgaactgtccgtgctcgatggacatggccgcgagcgcgagcgttacaagctgccg
tacggcgccaccatcaccgccaaggacggcgatgcggtcaaggccggtcaaagcgttgcc
aactgggatccgcataaccacccgatcgtctcggaagtggccggtttcatccgtttcatc
gacttcgttgacggcgtcaccgtcatcgagaagaccgacgaactgaccggtctggcctcg
cgcgaaattaccgacccgaagcgtcgcggtgcgcatgccaaggaactgcgtccgatcgtg
cgtatcgtcgatggcaaggggaatgacctgacgatcccgaacacggatctgccggcgcag
tacctgctgccgccgcgctccattgtcaacctgcaggatggcgccgccgtcggcgtgggc
gacgtggtggcgaagatcccgcaggaagcgtccaagacccgcgacatcaccggtggtctg
ccgcgcgttgccgacttgttcgaagcacgcaagccgaaggatccggcgatcctggccgag
cgctcgggcatcatcagcttcggtaaggacaccaagggcaagcagcgcctgatcatcaaa
gacaccgatggttcggaacacgaagagctgatcccgaagtaccgccagatcatcgtgttc
gaaggcgagcacgtgactaagggcgagacggtggtggatggcgagccgagcccgcaggac
atcctgcgtctgctgggtgtcgaaccgctggccgcgtacctggtcaaggaaatccaggac
gtgtaccgcctgcaaggcgtgaagatcaacgacaagcacatcgaggtgatcactcgccag
atgctgcgtaaggtcgagatcgtcgatcagggcaacagcaaattcctcaacggcgagcag
gtcgagcgccagcgcgtcatcgaggaaaatgcccgcctggtcaagcgcaacgaactaccg
gccaagtacgatccggtgctgctgggtatcaccaaggcctcgcttgccaccgagtcgttc
atctcggcggcatcgttccaggagaccacccgcgtgttgaccgaggcggccgttcgcggc
acccgcgacaacctgcgcggtctgaaggaaaacgtgatcgtgggtcgcctgattccggcc
ggtaccggtctggcgtaccacgccggacgtcgcaaggcctcgggtctgaccgactcggaa
atggaaacgctgtcgggcaagccggcaggtgccgaaccggtcgcagctttggccgacgct
ggcgcggacgaggagtaa

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