KEGG   Xanthomonas oryzae pv. oryzae PXO86: AZ54_15135Help
Entry
AZ54_15135        CDS       T03765                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
xoy  Xanthomonas oryzae pv. oryzae PXO86
Pathway
xoy03030  DNA replication
xoy03410  Base excision repair
xoy03420  Nucleotide excision repair
xoy03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:xoy00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    AZ54_15135
   03410 Base excision repair
    AZ54_15135
   03420 Nucleotide excision repair
    AZ54_15135
   03430 Mismatch repair
    AZ54_15135
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:xoy03032]
    AZ54_15135
   03400 DNA repair and recombination proteins [BR:xoy03400]
    AZ54_15135
Enzymes [BR:xoy01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     AZ54_15135
    6.5.1.6  DNA ligase (ATP or NAD+)
     AZ54_15135
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     AZ54_15135
DNA replication proteins [BR:xoy03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    AZ54_15135
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     AZ54_15135
DNA repair and recombination proteins [BR:xoy03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     AZ54_15135
   NER (nucleotide excision repair)
    Other NER factors
     AZ54_15135
   MMR (mismatch exicision repair)
    Other MMR factors
     AZ54_15135
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID: AJQ83762
LinkDB All DBs
Position
3094625..3096229
Genome map
AA seq 534 aa AA seqDB search
MKRFAALYRTLDRSTGTLDKRAALVAYFRDAPALDAAWALYLLAGGKVASARMRIAGSGE
LREWITDTAGIADWLVADSYDHVGDLAETLALLLDDPVTEAADLPLAEWIEQRLLPIANK
DVEVRKACIMQAWRSLAFDERLVFNKLLTGALRVGVSQRLVQQALAELSGMDTARIAQRM
LGSWRPHPTYLAELLTREELPGDRQQPYPFFLASPLEAEVQTLGAIDDWLLEWKWDGIRL
QLIRRAGEAALWSRGEERLDGRFPEIEHAALQLPDGTVIDGELLAWQPEQSLPMPFTALQ
TRIQRLKPGPKTLTAAPARVVAYDLLELDGADLRGRPLQERRALLEGVLTTLADPRIVAS
PLVQVSDWHAAAQVRVEARERGVEGLMLKRAGSVYQSGRRRGDWWKWKIDPLTIDAVLLY
AQAGHGRRSTLYTDYTFGLWHEGQLVPIAKAYSGLDDSEILQLDRWIRANTTERFGPVRA
VTAHHVFELGFEAVNRSARHKSGIAVRFPRILRWRQDKPMADADHLSSLQALVR
NT seq 1605 nt NT seq  +upstreamnt  +downstreamnt
gtgaagcgtttcgcggcgttgtaccgcaccctggatcgcagcaccggcacgctcgacaag
cgcgccgcgctggtggcgtatttccgcgatgcgccggcgctggatgcggcgtgggcgctg
tatctgctggccggtggcaaggtggccagcgcgcgcatgcgcatcgccggcagcggcgaa
ttgcgcgagtggatcaccgacaccgccgggattgccgattggctggtggccgacagctac
gaccacgtcggcgatctggccgaaaccctggccttgctgctggacgatccggtcaccgaa
gcggccgatctgccactggcggagtggatcgaacagcgcctgctgccgatcgccaacaag
gacgtggaagtgcgcaaggcctgcatcatgcaagcatggcgcagcctggccttcgacgag
cggctggtgttcaacaagctgctcaccggcgcgctgcgcgtgggcgtgtcgcagcggctc
gtgcagcaggcattggccgaattgtcgggcatggataccgcgcggattgcgcagcgcatg
ctcggcagttggcggccgcatccgacctatcttgcggagttgttgaccagagaagaactg
cccggcgatcgccagcagccctacccgttctttctggcatcgccgctggaagccgaggtc
caaacgctcggcgccatcgacgactggctgctggaatggaaatgggacggcatccgcctg
caactgattcggcgcgcaggcgaagcggccttgtggtcgcgcggcgaagagcgcctggac
ggtcgctttccagaaatcgaacacgccgcgctgcagttacccgacggcaccgtgatcgat
ggcgagctgctggcctggcaaccggagcagtccctgccgatgccatttactgcactgcag
acgcgcatccagcggctcaagcccgggcccaagaccttgaccgccgcgcccgcgcgtgtg
gtggcctacgacctgctggaactggatggcgcagacctgcgcgggcgcccgttgcaggag
cggcgcgcattgctggaaggcgtcctcaccacgctggcagatccgcgcatcgtcgcctcg
ccgctggtgcaggtcagcgattggcacgccgcagcgcaggtacgtgtggaagcgcgcgag
cgcggggtggaaggactgatgctcaagcgcgccggttcggtgtatcaatccggtcgccgg
cgcggcgattggtggaaatggaagatcgacccgctcaccatcgatgccgtgctgctgtat
gcgcaggccggccacggccgacgcagcacgctctataccgattacaccttcgggctgtgg
cacgaaggccaactggtgccgatcgccaaggcgtattcgggtctggacgacagcgaaatt
ctgcagctggatcgttggatccgggccaatactaccgagcgcttcggcccggtgcgcgcg
gtcacggcgcatcatgtgttcgagctggggtttgaagcggtgaaccgtagcgcgcggcac
aaatccggcatcgcggtgcgcttcccgcgcatcctgcgctggcgtcaggacaagccgatg
gccgacgccgatcatctgagcagcctgcaggcactggtgcggtga

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