KEGG   Xanthomonas perforans: BJD13_09900Help
Entry
BJD13_09900       CDS       T04778                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
xpe  Xanthomonas perforans
Pathway
xpe03030  DNA replication
xpe03410  Base excision repair
xpe03420  Nucleotide excision repair
xpe03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:xpe00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    BJD13_09900
   03410 Base excision repair
    BJD13_09900
   03420 Nucleotide excision repair
    BJD13_09900
   03430 Mismatch repair
    BJD13_09900
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:xpe03032]
    BJD13_09900
   03400 DNA repair and recombination proteins [BR:xpe03400]
    BJD13_09900
Enzymes [BR:xpe01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     BJD13_09900
    6.5.1.6  DNA ligase (ATP or NAD+)
     BJD13_09900
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     BJD13_09900
DNA replication proteins [BR:xpe03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    BJD13_09900
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     BJD13_09900
DNA repair and recombination proteins [BR:xpe03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     BJD13_09900
   NER (nucleotide excision repair)
    Other NER factors
     BJD13_09900
   MMR (mismatch exicision repair)
    Other MMR factors
     BJD13_09900
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Motif
Other DBs
NCBI-ProteinID: APO99355
UniProt: A0A0G8UNW4
LinkDB All DBs
Position
1861988..1863592
Genome map
AA seq 534 aa AA seqDB search
MKRFAALYRTLDRSTGTLDKRAALVAYFRDAPALDAAWALYLLAGGKVASARMRIASSGE
LREWITDTAGVADWLVADSYDHVGDLAETLALLLDDPVAEAADLPLAEWIEQRLLPIANQ
DVEVRKACIVQAWGSLAFDERLVFNKLLTGALRVGVSQRLVQHALAELSGVDIARIAQRM
LGSWRPHPTYLADLLTSEELPGDRQQPYPFFLASPLEAEVDTLGPIDDWLLEWKWDGIRL
QLIRRAGEAALWSRGEERLDGRFPEIEHAALQLPDGTVIDGELLAWQPKQPLPMPFTALQ
TRIQRLKPGPKTLAAAPARVVAYDLLELAGEDLRERPLQERRALLEGVLATLADPRIVAS
PLVQVSDWQAAAQVRVEARERGVEGLMLKRASSVYQSGRRRGDWWKWKIDPLTIDAVLLY
AQAGHGRRSTLYTDYTFGLWHEGQLVPIAKAYSGLDDKEILQLDRWIRANTTERFGPVRA
VTAHHVFELGFEAVNRSARHKSGIAVRFPRILRWRHDKPMAEADHLSTLQALAR
NT seq 1605 nt NT seq  +upstreamnt  +downstreamnt
gtgaagcgtttcgcggcgttgtaccgcaccctggaccgcagcaccggcacgctcgacaag
cgcgctgcgctggtcgcgtatttccgcgatgcgcccgcgctggacgcggcatgggcgctg
tatctgctggccggtggcaaggtagccagcgcgcgcatgcgcattgccagcagcggcgaa
ctgcgcgaatggatcaccgacaccgccggcgttgccgattggctggtcgccgacagctac
gaccatgtcggcgatctggccgaaaccctggccttgctgctggacgacccggtcgccgag
gcggccgatctgccattggcagaatggatcgaacaacggctgctgccgatcgccaaccag
gacgtggaggtccgcaaggcctgcatcgtgcaggcgtggggcagcctggccttcgacgag
cggctggtgttcaacaagctgctgaccggcgcattgcgggttggggtgtcgcaacggctc
gtgcagcacgcgctggccgaattgtcgggcgtggatatcgcgcgcattgcgcagcgcatg
ctcggcagttggcggccgcatccaacctatcttgcagacctgttgaccagcgaagaactg
cccggcgaccgccagcagccctatccgttctttttggcatcgccgctggaagcggaggtc
gacacgctgggccccatcgacgactggctgctggaatggaaatgggacggcatccgcctg
cagctgattcgccgcgccggcgaagcggcgctgtggtcgcgcggcgaagagcgtctggat
ggacgtttccccgaaatcgaacacgccgcactgcaattgccggacggcaccgtcatcgat
ggcgagctgctggcctggcaacccaaacagcccctgccaatgccgtttaccgcgttgcag
acgcgcatccagcggctcaagcccgggcccaagacattggccgccgcaccggcgcgcgtg
gtggcctacgacctgctggaactggcgggcgaagacctgcgcgagcgcccgttgcaggag
cggcgcgcactgctggaaggcgtgctcgccacgctggcagatccgcgcatcgttgcctcg
ccgctggtgcaggtcagcgattggcaggccgcagcgcaggtgcgcgtggaagcgcgcgaa
cgcggcgtggaagggctgatgctcaagcgcgccagttcggtgtatcaatccggtcgccgt
cgcggcgattggtggaaatggaagatcgacccactgaccatcgacgcggtgctgctgtac
gcgcaggccggccacggcagacgcagcacgctctacaccgactacaccttcgggctatgg
cacgagggccaactggtgccgatcgccaaggcctattcgggcctggacgacaaggaaatt
cttcaactggatcgctggatccgtgccaacaccaccgagcgcttcggcccggtgcgcgcg
gtcaccgcgcatcacgtgttcgagcttgggtttgaagcggtgaaccgcagcgcgcggcat
aagtccggcatcgcggtgcgcttcccgcgcatcctgcgctggcgtcacgacaagccgatg
gccgaagccgatcatctgagcaccctgcaggcactggcgcggtga

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