KEGG   Xanthomonas phaseoli: XppCFBP6546_04730Help
Entry
XppCFBP6546_04730 CDS       T05156                                 

Gene name
XppCFBP6546P_04730
Definition
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
xph  Xanthomonas phaseoli
Pathway
xph03030  DNA replication
xph03410  Base excision repair
xph03420  Nucleotide excision repair
xph03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:xph00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    XppCFBP6546_04730 (XppCFBP6546P_04730)
   03410 Base excision repair
    XppCFBP6546_04730 (XppCFBP6546P_04730)
   03420 Nucleotide excision repair
    XppCFBP6546_04730 (XppCFBP6546P_04730)
   03430 Mismatch repair
    XppCFBP6546_04730 (XppCFBP6546P_04730)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:xph03032]
    XppCFBP6546_04730 (XppCFBP6546P_04730)
   03400 DNA repair and recombination proteins [BR:xph03400]
    XppCFBP6546_04730 (XppCFBP6546P_04730)
Enzymes [BR:xph01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     XppCFBP6546_04730 (XppCFBP6546P_04730)
    6.5.1.6  DNA ligase (ATP or NAD+)
     XppCFBP6546_04730 (XppCFBP6546P_04730)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     XppCFBP6546_04730 (XppCFBP6546P_04730)
DNA replication proteins [BR:xph03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    XppCFBP6546_04730 (XppCFBP6546P_04730)
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     XppCFBP6546_04730 (XppCFBP6546P_04730)
DNA repair and recombination proteins [BR:xph03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     XppCFBP6546_04730 (XppCFBP6546P_04730)
   NER (nucleotide excision repair)
    Other NER factors
     XppCFBP6546_04730 (XppCFBP6546P_04730)
   MMR (mismatch exicision repair)
    Other MMR factors
     XppCFBP6546_04730 (XppCFBP6546P_04730)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID: ATS29252
UniProt: A0A0A3WFL6
LinkDB All DBs
Position
1043786..1045390
Genome map
AA seq 534 aa AA seqDB search
MRRFAALYRTLDRSTGTLDKRAALVAYFREAPALDAAWALYLLAGGKVASARMRIASSGE
LREWITDTAGVADWLVADSYDHVGDLAETLALLLDDPVTEAADLPLAEWIEQRLLPIANQ
DVDIRKACIVQAWRSLAFDERLVFNKLLTGALRVGVSQRLVQQALAELSGVDIARIAQRM
LGSWRPHPTYLADLLTSEELPGDRQQPYPFFLASPLEAEVETLGAIDDWLLEWKWDGIRL
QLIRRAGEAALWSRGEERLDGRFPEIEHAAMQLPDGIVIDGELLAWQPEQPLPMPFTALQ
TRIQRLKPGPKTLAAAPARVVAYDLLELAGEDLRERPLQERRALLEDVLSALADPRIVAS
PLVQVSDWQAAAHVRVEARERGVEGLMLKRAGSVYQSGRRRGDWWKWKIDPLTIDAVLLY
AQAGHGRRSTLYTDYTFGLWHEGQLVPIAKAYSGLDDKEILQLDRWIRANTTERFGPVRA
VTAQHVFELGFEAVNRSARHKSGIAVRFPRILRWRHDKPMAEADHLSTLQALAR
NT seq 1605 nt NT seq  +upstreamnt  +downstreamnt
gtgaggcgtttcgcggcgttgtatcgcaccctggaccgcagcaccggcacgctcgacaag
cgcgctgcactggtggcgtatttccgcgaggcgcccgcgctggatgcggcatgggcgctc
tatctgctggccggtggcaaggtggccagtgcgcgcatgcgcattgccagcagcggcgag
ctgcgtgaatggatcaccgacaccgccggcgttgccgactggctggtcgccgacagctac
gaccatgtcggcgatctggccgaaacgctggccctgctgctggacgacccggtcaccgag
gcggccgacctgcccctggcagagtggatcgaacagcggctgctgccgatcgccaaccag
gacgtggacatccgcaaggcctgcatcgtgcaggcgtggcgcagcctggccttcgacgag
cggctggtgttcaacaagctgctgaccggcgcactgcgggttggcgtgtcgcaacggctc
gtgcagcaggcgctggccgaattgtcgggcgtggacatcgcgcgcattgcccagcgcatg
ctgggcagttggcggccgcatccgacctatcttgcagacctgttgaccagcgaagaactg
cccggcgaccgccagcagccctacccgttcttcctggcttcgccgctggaagcggaggtc
gaaacattgggtgccatcgacgactggctgctggaatggaaatgggacggcattcgcctg
cagctgattcgccgcgctggcgaagcggcactgtggtcgcgcggcgaagaacgtctggat
ggacgtttccctgaaatcgaacacgccgcgatgcaattgccggacggcatcgtcatcgat
ggcgagctgctggcctggcaacccgaacagcccctgccgatgccgtttaccgcgttgcag
acgcggatccagcggctcaagcccgggcccaagaccttggccgccgcaccggcgcgcgtg
gtggcctacgacctgttggaactggcgggcgaagacctgcgcgagcgcccgctgcaggag
cggcgcgctctgctggaagacgtgctctccgcgcttgcagacccgcgcatcgttgcctcg
ccgctggtgcaggtcagcgactggcaggccgcagcgcacgtgcgcgtggaagcgcgcgaa
cgcggcgtggaagggttgatgctcaagcgcgccggctcggtgtatcaatccggtcgccgt
cgcggcgactggtggaaatggaagatcgacccgcttaccatcgatgctgtgctgctgtac
gcgcaagccggccacggccgacgcagcacgctctataccgactacaccttcgggctgtgg
catgagggccaactggtgccgatcgccaaggcgtattccggcctggacgacaaggaaatc
ctgcagctggatcgctggatccgtgccaacaccaccgagcgtttcggcccggtgcgcgcg
gtcaccgcgcagcatgtgttcgagctggggtttgaagcggtgaaccgcagcgcgcggcac
aagtccggcatcgcagtgcgcttcccgcgcatcctgcgctggcgtcacgacaagccaatg
gccgaagccgatcatctgagcaccctgcaggcactggcgcggtga

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