KEGG   Xanthomonas sacchari: SB85_06470Help
Entry
SB85_06470        CDS       T03566                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
xsa  Xanthomonas sacchari
Pathway
xsa03030  DNA replication
xsa03410  Base excision repair
xsa03420  Nucleotide excision repair
xsa03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:xsa00001]
 Genetic Information Processing
  Replication and repair
   03030 DNA replication
    SB85_06470
   03410 Base excision repair
    SB85_06470
   03420 Nucleotide excision repair
    SB85_06470
   03430 Mismatch repair
    SB85_06470
Enzymes [BR:xsa01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     SB85_06470
    6.5.1.6  DNA ligase (ATP or NAD+)
     SB85_06470
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     SB85_06470
DNA replication proteins [BR:xsa03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    SB85_06470
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     SB85_06470
DNA repair and recombination proteins [BR:xsa03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     SB85_06470
   NER (nucleotide excision repair)
    Other NER factors
     SB85_06470
   MMR (mismatch exicision repair)
    Other MMR factors
     SB85_06470
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID: AJC45456
UniProt: A0A0A8E019
LinkDB All DBs
Position
1579569..1581161
Genome map
AA seq 530 aa AA seqDB search
MKRFAALYRQLDQSTATLDKRAALVAYFEQAPPADAAWAIWLLSGGKLRRIANTRELREW
IAQESGLPGWLVDDSYDHVGDLAETLTLLLDDPAETPDPAPLRDWIEERLLPVAAQDDAA
RRAAVVAGWRSLAFDERLLFNKLLTGALRVGVSQRLVQQALAAMSGIDIARIAQRMLGAW
SPTPQALEQLLSDEVLPSDRQQPYPFFLASPLEAEAATLGALDDWLLEWKWDGIRLQLIR
RDGEVALWSRGEERLDGRFPEIEAAAATLPRDAVIDGELLVWREGEPAPLPFTALQTRIQ
RRKPGAKTLADTPARVLAYDLLELDGQDLREQPLQQRRAQLQTLLEAHADPRLTLSPQVH
ATTWEQAATLREDARTRGVEGLMLKRATSPYQSGRRRGDWWKWKVAPLTIDAVLLYAQAG
HGRRSTLYTDYTFGLWDGEQLVPVAKAYSGLDDSEILALDRWIRAHTTERFGPVRAVTPY
HVFELGFEAVNRSSRHKSGIAVRFPRILRWRHDKPFAEADRLTTLQALAR
NT seq 1593 nt NT seq  +upstreamnt  +downstreamnt
atgaagcgcttcgccgcgctgtaccggcaactggaccagagcaccgcgacgctggacaag
cgcgccgcgctggtggcgtacttcgagcaggcgccgccggccgacgcggcctgggcgatc
tggctgctcagcggcggcaagctgcggcgcatcgccaacacccgcgaactgcgcgagtgg
atcgcgcaggaaagcggcctgcccggctggctggtggacgacagctacgaccacgtcggc
gatctcgccgaaaccctcacgctgctgctcgacgatccggcggaaaccccggacccggca
ccgctgcgcgactggatcgaggaacgcctgctgccggtggccgcacaggacgacgccgcg
cgccgcgccgcggtggtggcgggctggcgcagcttggccttcgacgaacgcctgctgttc
aacaagctgctgaccggagcgctgcgcgtgggcgtgtcgcagcgactggtgcagcaagcc
ttggcggcgatgtccgggatcgacatcgcacgcatcgcccagcgcatgctcggcgcatgg
tcgccgacgccgcaggcgctggagcagttgctgtccgacgaggtgctgcccagcgaccgc
cagcagccctacccgttcttcctggcctcgccgctggaagccgaggccgccacgctcggc
gcgctcgatgattggctgctggaatggaaatgggacggcatccgcctgcagctgattcgc
cgcgacggcgaggtggcgttgtggtcgcgtggcgaggaacgcctggacgggcgcttcccg
gagatcgaggcggcggcggcgacgctgccgcgcgatgcggtgatcgatggtgagctgctg
gtctggcgcgaaggcgagcccgcgccgttgccgttcaccgcgctgcagacccgcatccag
cgacgcaagcctggcgccaagaccctggccgacacgccggcgcgggtgctcgcctacgac
ctgctggaactggacggccaggacctgcgcgagcagccgctgcagcagcgccgcgcgcag
ttgcaaacgttgctggaggcgcacgccgatccgcgcctcacgctgtcgccacaggtgcac
gccacgacatgggagcaggcggcaacgctgcgcgaggatgcgcgcacgcgcggcgtggaa
ggcttgatgctcaagcgcgcgacgtcgccctaccagtctggccgccgtcgcggcgactgg
tggaaatggaaggtggcgccgctgaccatcgatgcggtgctgctgtacgcgcaagcggga
cacggccggcgcagcacgctgtacaccgactacaccttcggcctgtgggatggcgagcaa
ctggtgccggtggccaaggcgtactccggcctggatgacagcgagatcctggcgctggac
cgctggatccgtgcgcacaccaccgagcgcttcggcccggtgcgtgcggtgacgccgtat
cacgtgttcgagctcggcttcgaggcggtgaatcgcagcagccggcacaagtccggcatc
gccgtgcgcttcccgcgcatcctgcgctggcgccacgacaagccgttcgccgaggccgac
cgcttgaccacgctgcaggcgctggcgcgatga

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