Xenopus tropicalis (tropical clawed frog): 100101794
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Entry
100101794 CDS
T01011
Symbol
smarcc2
Name
(RefSeq) SWI/SNF complex subunit SMARCC2 isoform X4
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
100101794 (smarcc2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xtr03021
]
100101794 (smarcc2)
03036 Chromosome and associated proteins [BR:
xtr03036
]
100101794 (smarcc2)
Transcription machinery [BR:
xtr03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
100101794 (smarcc2)
Chromosome and associated proteins [BR:
xtr03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
100101794 (smarcc2)
PBAF complex
100101794 (smarcc2)
GBAF(ncBAF) complex
100101794 (smarcc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_1
SWIRM
SWIRM-assoc_3
Myb_DNA-binding
Myb_DNA-bind_6
Chromo
BRCT_2
Motif
Other DBs
NCBI-GeneID:
100101794
NCBI-ProteinID:
XP_002934541
Xenbase:
XB-GENE-490675
UniProt:
A0A8J0QLK5
LinkDB
All DBs
Position
2:137468162..137517578
Genome browser
AA seq
1103 aa
AA seq
DB search
MAVRKKDGGPNVKFYEASDTVAQFDNVRLWLGKNYKKYIQAEPPTNKSLSSLVVQLLQFQ
EEVFGKHVSNAPLTKLPMKCFLDFKVSGALSHILAAAYKFKSDQGWRRFDFQNPSRMDRN
VEMFMTIEKSLVQNNCLSRPNIYLHPDIDSKLQSKLKDIVKRHQGTVTEDKSHASHIVVP
VPSNLEDEEWVRPILKRDKQVLLHWGYYPDSYDTWVPASEVEASVEDAPTVEKPRKVHAK
WILDTDSFNEWMNEEDYELTDEKNPVARRKKISAKTLTDEVSSPDSDRRDKKGPNYKKRK
RSPSPPPSAEAKKKTVKKGPSTPYTKSKRGHREEEQEDLTKDMDEPSPVPNVEEVTLPKT
VNTKKDSESAPIKGGTVTDLDEQEDESMDAVTKEEDETSSGIKGEQMKTSDLHEDNVTEQ
THHIIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEY
LTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDAESRPTPMGPPPTSHFHVLADTPSG
LVPLQPKTPQQSSASQQMLNFPDKSKDKPSDLQNFGLRTDMYSKKNTTSKSKAAASATRE
WTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLEDSEASLGPLA
YQPIPFSQSGNPVMSTVAFLASVVDPRVASAAAKSALDEFSKMKEEVPTALVEAHVRKVE
DAARITGKADPSYGLESSGIAGTACEDNERIDCPKRSTPEIHEESSSDEPQTDAQPTEDK
KEPKDSPSETLPEEEGKEKISEVAKKEEEKSKDGDTDKESEKSDIDMADGEKVSDTKEGV
EEIEKEEGGGKNKVERDIGEGNLSTAAAAALAAAAVKAKHLAAVEERKIKSLVALLVETQ
MKKLEIKLRHFEELETIMDREREALEYQRQQLLADRQNFHMEQLKYAEIRARQQHFQQIQ
NQHQQQQQTTSSSQPVPPTGHSVSGSQSSLIQAPVSSASNAESLGQPSAPSTQPPVSSQQ
QQGGTQPSPAHPSGTFTSQQSSTPLVPSAVSVPAQPPVPAATHSPAIVAAMQGGVALTTS
PVPDPATPLPPDSIGNTVAQPQP
NT seq
3312 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcggaagaaggacggcggcccgaatgtgaaattttacgaggcatccgacact
gtcgcacagttcgacaacgtgcggctatggctgggcaagaattataagaagtatatccaa
gcagaaccccctaccaacaagtccctgtccagcctggtggtacagctgctgcagttccaa
gaagaggtgtttgggaaacatgtcagcaatgctcctctcactaaacttccgatgaaatgc
ttcttggacttcaaagtgagtggagctctctctcacatccttgctgctgcctataaattc
aagagtgaccagggatggcgaaggtttgattttcagaatccttcacgtatggatcggaat
gtggaaatgttcatgaccattgagaagtctctggtacagaacaattgcctgtctaggcct
aacatataccttcacccggacatagactcaaaactacagagtaagctgaaagacattgta
aaacgacatcagggcactgtaacagaagacaagagtcatgcatctcacatcgttgttcct
gttcctagcaatttagaagatgaggagtgggtgcgacctattcttaagagggataaacag
gttcttctgcactggggttattatcctgacagttatgacacgtgggttcctgcaagtgag
gttgaagcttcagtggaagatgctcccacagtagaaaaaccacgcaaggtccatgccaaa
tggattctggacacagactcattcaatgagtggatgaatgaagaggactatgagctaact
gatgagaagaatcctgttgcacggcgtaagaaaatctcagccaagacccttactgacgag
gtaagtagccctgactcagaccgcagagacaagaagggacctaactacaagaagaggaaa
cgctcaccctctcctcctcccagcgctgaagcaaagaaaaagactgtcaaaaagggccct
tctaccccatataccaaatcaaagaggggtcatcgagaggaggaacaggaggaccttacc
aaggatatggatgaaccttccccagttcctaatgtggaagaagttactctccctaaaaca
gtgaacactaagaaggactctgaatctgcaccaataaaaggagggactgtgacagacctg
gatgaacaggaggatgaaagcatggatgcagtgaccaaggaagaagatgagacctcatct
gggattaaaggcgagcaaatgaaaacatccgatcttcatgaggacaatgtgactgaacaa
acacaccatatcatcattcctagctatgctgcttggtttgactataacagtgtgcatgct
attgaacgtcgggcattaccagagttcttcaatggcaagaacaagtccaaaacaccagag
atataccttgcctatagaaacttcatgattgacacctatagactaaaccctcaggaatac
cttacttctacagcatgtcgtcgcaacttggcaggggatgtctgtgctatcatgagggtt
catgccttcctagaacagtgggggctcattaactaccaagtggatgctgagagtcgtcct
actccaatgggccctcctccaacatcacatttccatgtcttagctgatactccatcagga
ctggttccactgcagcctaaaacaccacagcagagctctgcttcacaacagatgctcaat
ttccctgataaaagtaaggataaaccaagtgaccttcagaatttcggcttacggacagat
atgtatagtaagaagaacacaacatccaagagtaaggctgctgccagtgcaacacgcgaa
tggactgagcaggagacgctgttgctacttgaggctctggaaatgtataaagatgattgg
aacaaagtatctgagcatgtggggagccgcacacaggacgagtgtatcctgcatttctta
cgacttcccattgaggatccatatctagaggactctgaggcctctctgggaccactggcc
tatcagcccataccctttagccaatcggggaatcctgtgatgagcacagtagccttcctt
gcatctgtagtagatcctcgggtagcatcagctgcagcaaaatcagctttggatgaattt
tccaagatgaaggaggaggttcccacagcactggtggaagctcatgtcagaaaggtcgag
gatgcagccagaatcactggaaaagctgatcctagttatggccttgagagcagtggtatt
gctggaacagcttgcgaagacaacgagaggatagattgtcccaaaaggagcacccctgaa
atccatgaagagagcagttcagatgagccccagacagatgcgcagcctacagaagacaag
aaagagccaaaggattcacccagtgaaacactccctgaagaagagggtaaggagaaaatc
agtgaagtagccaagaaggaggaagaaaaaagcaaagatggagatactgataaagaatca
gagaaaagtgatattgacatggctgatggggagaaggtttctgacaccaaggaaggagtt
gaggagatagaaaaggaagagggtggtggaaagaacaaggttgaaagagacattggagaa
ggcaacctttctacggctgctgcggcggctctggctgctgctgctgtaaaggccaaacat
ttggcagcagtggaagagaggaagataaaatcacttgttgcacttctggtggaaactcag
atgaagaagctagaaatcaaactgagacattttgaagagttagagaccatcatggaccga
gaaagggaggcgctggaatatcagagacagcagcttctagctgataggcagaactttcac
atggagcaactaaaatatgctgagatacgagcccgtcaacagcactttcagcagatccaa
aaccaacatcagcagcagcagcagaccacttccagcagccaacctgtgccacccactggc
cattcagtttctggatcacagtcatcactgattcaagcccctgtgagctcagccagcaat
gctgaaagtcttggtcagccgtcagcaccatctacacagccgcctgtcagtagtcagcaa
cagcaaggaggaacacagcccagtccagcacacccttctggaacatttacaagccaacag
tcatctaccccattggttccatcagcagtatcggttcctgcccagccaccggtgcccgct
gccacacacagtccagccatcgtagccgcaatgcagggcggggttgccctcactaccagt
cctgtgccagaccctgcaacacctctgcctccagactccattggaaacacagtagcccag
ccccagccgtag
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