Xenopus tropicalis (tropical clawed frog): 100124866
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Entry
100124866 CDS
T01011
Symbol
patl1
Name
(RefSeq) protein PAT1 homolog 1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100124866 (patl1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xtr03019
]
100124866 (patl1)
Messenger RNA biogenesis [BR:
xtr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
100124866 (patl1)
mRNA degradation factors
5'-3' decay
Decapping complex
100124866 (patl1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
100124866
NCBI-ProteinID:
NP_001096293
Xenbase:
XB-GENE-5808767
UniProt:
A4IHM1
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All DBs
Position
7:complement(57121510..57216316)
Genome browser
AA seq
470 aa
AA seq
DB search
MESLEDGDGFPDLEEDEEIDQFNDDTFGAGAVDDDWREEHERLAEMEEKLPASHILARVT
SSPINDLLGDQQEELEQSLNQLVKENEEPALPQGSLSQISSGMNSSIWDTARMIRPIRGP
LLMEDMTPLSILHEYGLATVAPPGRDDTERDASERALPRRSTSPVIGSPPVRAVPIGTPP
KHGTSPNFSHTQVLCPNPIHIRASSPFSSHHSNPASILRHPFPSALSPLQRAQLLGGAQP
AVAGQMSPSQFSRPSGLHGPTLASVAPKLLQGHVGQMMTPGGVGFRPFFGVPSAPGAQIK
NMRSQQQFRPDTTHLHPQHRRMLYQRQQNRNQHRGVNGTGGERNCRPAQMELNHRDPYAG
LMLQREKEWVCRIQLLQLQSTDPYHDDYYYQNYFEKLGKLSVSQDRSREGPKKERTKLIT
PQVAKLEHAYKPVQFEGSLGKLTVSSVNNPRKMIDAVATSRSDEDVSIFQ
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atggagtctctagaggatggtgatgggtttccggacttggaggaagatgaagaaattgat
caatttaatgacgacacttttggagctggagcagtggatgatgattggcgagaagaacat
gagcgcttggcagaaatggaagaaaaattacccgcgtctcacatcctagctagagtcacg
tcttccccaattaatgacctactgggggaccagcaggaggagctggagcagagtttgaac
cagctggtgaaggagaatgaggaaccagccctaccacagggttcactttcacagatttct
tctggcatgaattcaagcatctgggacacggcaagaatgatacgacctatcagagggcca
ctacttatggaggacatgacccccctctcaattctgcatgaatatggtttggctactgtt
gcacccccaggtcgagatgataccgaaagggatgcttctgaaagagccttgcctcgccga
tctacctctcctgtaattggaagtccacctgtgcgagcagttcctattggaacacctcca
aagcatggaacatctcctaattttagtcacacacaggttttgtgtcctaacccaatccat
attcgggcttcatctccattcagtagtcaccatagcaacccagcttccatcctgaggcat
ccgttcccttctgccctatccccacttcaacgagcacagctcttaggaggcgctcagcca
gcggttgctggtcagatgtctcccagccagttttcccgtccttctggactacatggccca
acactggcctcagttgctcctaaacttttgcaaggccatgtcggccagatgatgacgcct
ggaggggttggattccgccctttctttggtgttccttctgctccaggtgctcaaataaaa
aatatgaggtcacagcagcagttccgtccagatacaactcacctgcacccacagcaccgt
cgtatgctttaccagcgccaacaaaaccgcaaccagcatcgaggtgtaaatggcactggt
ggggaacgaaattgcagacctgcacaaatggagcttaatcacagagacccctatgcaggg
cttatgctgcaacgggaaaaggaatgggtatgccgtattcaacttcttcagcttcagagc
actgacccataccatgatgactactactatcagaattactttgagaagctcggcaagttg
tctgtatctcaggacagatctagagaaggaccaaaaaaggaacgaacaaagctgatcacg
ccacaagttgctaaattggagcatgcatacaaaccagtgcagttcgaaggatcacttgga
aagcttacagtttctagtgtaaacaaccctcgaaagatgattgatgctgtggcaacatca
cgttctgatgaagatgtaagtatttttcagtaa
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integrated database retrieval system
