Xenopus tropicalis (tropical clawed frog): 100490199
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Entry
100490199 CDS
T01011
Symbol
col17a1
Name
(RefSeq) collagen alpha-1(XVII) chain isoform X1
KO
K07603
collagen type XVII alpha
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
LapA_dom
Motif
Other DBs
NCBI-GeneID:
100490199
NCBI-ProteinID:
XP_031761733
Xenbase:
XB-GENE-6467921
UniProt:
F7AU67
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All DBs
Position
7:27854937..27898560
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AA seq
1487 aa
AA seq
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MDGIMKKTYRDGGEVSGRTYTETVTSSSSRLVSLPPKGANSSGSKISSQGGGGGVEKKTI
VQSSSTYVSSAGGGSRLNSTSGSKYPHSPSSTLSISPNSTFERKAYVSSTTRQGAYEGSS
SGNSSPEYARKEMASSSSRGRAQSRETEIRTRLQSASPSTRWTELDDVKKLLKRSTSVSP
TRSPTNTLPIPKKATVETKIVTESSQSVAGSYDTTILDSALPSYMWTSTLPAGSSMGGYQ
NNMGFSSSMLNAASTGSVFGVPNNLAPSSPSLNSGYTSSSAVFGVQNNLTPMPAPGPIVS
SVAASTASGYGVQKNVTHSSGGHGSTVTTSAVTSTKTQGDDILGKDYKFLLLEKEKGPSK
KEGDVLIMSKDTGKVFTASNGGVSGTYEEDSLKKEKQCFTSTEASYKTEANGGLKVRKDK
ATYAEIQRVDGQKAAATYQDGGEGGGGTDAVCGPCASCCKWWMWALGLLLGLLFLLGLLF
GLLSLWQDVKNLTTRVKTLEESQPNSKVVAEYLQANRINAVGSAPGASSADIDLSSNTLG
VGAGFTDQNKEAFWDYMKRRMQQERGVFIGEKGESGQKGDMGMQGERGERGYAGPQGAPG
LIGHTGAEGPKGQKGNAGDTGVEGPSGQRGREGLPGPRGDPGPPGTGEKGDRGIAGEPGQ
SGQPGLPGQIGLKGAMGLQGSPGVPGTPGIQGFRGEAGLPGPKGDKGGVGPPGVKGDQGE
KGSRGLTGEPGPRGLPGPTGEPGPKGSSGSQGPDGIQGQRGEQGLLGLPGPRGPPGSSGD
PGLPGLPGAQGPPGPPGTPGRGGPKGDPGDPGRVIAQEGNTYSIPGPPGPAGPIGPPGSP
GVPGPVGPAGLPGQPGVKGAQGDQGDPGVSISRQESSAAQQTLPGPPGPPGPPGSPGIPG
VAGPSIQGPPGQAGVQGPPGPPGPQGLAGDGKEGPPGPPGPQGPPGLPGSFVPTSETFFA
GPPGPPGPPGLPGSTGEPGIPGDPGQPGLPGAPGRDGPVAVGPPGSPGSPGFPGQPGPQG
ERGEAGIPGAPGIPGSSRGPPGGGRPGQGLPGPPGPPGPPGPPGSSDSSGRVAEEVQQYI
AQYLQSENVRTYLIGPQGPPGPKGDSGQDVDYAELASRVMSYIRGSGLTSSDGGQGFVGP
RVTYDEILSVLRSSGLQIGVPGPPGPPGQPGLPGSGYGDITALLENSEFRGIVGPPGPPG
QPGRPGRVGSPGPPGPMGPPGNPETSRTSFGVEEISSYLQSVGYISGPPGPPGPPGPPGS
PGSPGGGGGLVSYAENAYSSDRLRTELIEYLTSDNIRRYISGPAGPPGPPGPQGLRGPKG
DSGIISPSSGSSLSSGYSISSGSSQSSGSSFGSSSDSSFLLDYDEVANRVTEKIQSQGLL
AEVSYNIARGNVAGPQGPPGPQGPPGICQVYATHANITTDLMELFRAHGTIQGPPGLTGQ
KGERGFPGAKGDRGPTGYTGEPGPIGHKGEKGDTFYVGKRKRRSVGV
NT seq
4464 nt
NT seq
+upstream
nt +downstream
nt
atggatggtataatgaaaaaaacataccgggacggtggggaggtctctgggagaacctac
acagaaacagtaacgtcctcatcatcgagacttgtgtcattgccaccaaagggggcaaac
tctagcggatccaaaatttcctcccagggtggagggggtggagtggaaaaaaagaccata
gttcaaagcagcagcacttatgtttcttcagcaggaggaggttcaagactgaacagcaca
tccggctccaaatatccccattccccaagttccacgctctccatttcccccaactcaacc
tttgaaaggaaagcctacgtctcctccacaactcgccaaggagcatatgaaggaagctcc
agtggtaattcttcaccagaatacgctagaaaagaaatggcatcttcctcaagcagaggg
cgcgcacagagcagggagaccgaaatccgtactcggctccagagtgcctctccctccacc
aggtggacagaacttgacgatgtgaagaagttattaaaacgttccaccagcgtcagtccc
actagatccccaactaatactctccccattcctaaaaaagccacagtggaaaccaagatc
gtcacagaaagttcccagtcagttgcaggttcctatgacaccaccatcctggattctgct
ctcccatcttacatgtggacttccacacttccagcgggatcctcaatgggaggttaccaa
aacaatatgggcttcagttcttctatgctgaatgctgcctccacgggatcagtgtttgga
gttcccaataacctggctcctagctctccctcactaaattctgggtatacctcatcctct
gcagtattcggtgttcagaacaacctcaccccaatgccagcaccaggccctattgttagc
agtgtggcagcatccactgcctcaggatacggtgtgcagaaaaatgtcacgcacagctca
ggtggacatggaagcactgtgacaacttcagctgttactagcactaaaacccaaggtgat
gatatcctgggcaaggactacaagttcctcctgctggagaaagaaaagggccctagcaaa
aaggaaggagacgtgctcattatgtctaaggacaccggcaaagtgtttacagcttccaat
ggaggagtttcaggcacctatgaagaggattcattaaaaaaagaaaaacagtgttttacc
agtacagaggcctcctacaaaactgaagctaatggaggattgaaagttagaaaggacaaa
gccacttatgcagagatacaacgagttgatggccagaaagctgctgccacttaccaagat
ggaggagaaggaggtggaggtacagacgctgtctgcggcccatgtgcctcctgctgcaag
tggtggatgtgggcactgggtttgctccttgggttacttttcctccttggactacttttt
ggactcttatctctatggcaagatgtgaagaacctgactactcgtgtgaagactctagag
gagagtcagcccaacagtaaagtggtagctgagtacctccaggccaatagaataaatgca
gtaggcagtgcgcccggtgcctcttcagcggacattgatttatccagcaacaccttaggg
gttggagctggatttacagatcagaataaagaagctttctgggattacatgaaaaggaga
atgcagcaagaaagaggagttttcattggagaaaagggagagtcaggccaaaaaggtgac
atgggaatgcaaggggaaagaggtgaacgaggttacgctggaccccaaggtgcaccaggt
ctcattggccacactggagctgaagggccaaaaggacagaaaggcaatgctggtgacact
ggcgtggaaggcccgtctgggcaaagaggaagagaagggttacctggacctcgtggtgat
cctggtccaccaggaactggagaaaaaggggacagaggcatagcaggtgaaccaggacaa
tcaggacagccaggcttgccaggtcaaataggacttaaaggtgctatgggtcttcagggt
tccccaggagttccaggaacacccggaattcaaggtttccgaggcgaagcagggttgcca
ggacctaaaggtgacaaaggaggagttggaccccctggagttaaaggcgaccaaggtgaa
aagggatctcgaggccttacaggggaacctggaccaagagggttaccaggtcctactggg
gagcccggccctaaaggatcatcaggttcacaaggcccagatggaatccaaggtcaaaga
ggtgaacaaggacttcttggcctaccaggaccaagaggaccccctggttcctcaggagac
cccggccttccaggacttcctggagcacaaggcccaccaggacccccaggcacaccaggc
agaggaggacctaaaggtgatcctggcgatcccggcagagttattgctcaagagggtaat
acatattcaattcctggacctcctggaccagcaggacctattggaccaccaggatcacca
ggtgtaccaggtccagttgggccagccggtctcccaggacagccaggtgtaaaaggagct
cagggagatcaaggagatccaggcgtttcaatctccaggcaagaaagttcagctgcacaa
caaacacttccaggacccccaggtcctcctggtccccctggttctcccggcatacctggt
gttgcaggtccttcaatacaagggccaccaggacaagcaggcgtgcaaggtcccccagga
ccccctgggcctcaaggcttggcaggagatggaaaagaaggtccaccgggtccaccaggt
ccacaaggtcctccaggtcttcctggatcatttgttccaacatcagaaacctttttcgct
ggtccacctggtcctcctggtcctcctgggctgccaggatctactggagagccaggtatt
cccggtgatccaggtcaaccaggccttccaggggccccaggtcgtgatggtcctgttgct
gttgggcctccaggaagtccagggtcaccaggatttccaggacaacctgggccacaagga
gaaagaggtgaagctggtatcccaggtgctcctggcatcccaggaagttcacgaggacct
cctggcggtggaagacctggacaaggactccctggccctcctggtcctcctggtccccct
ggtccaccaggctcttctgatagcagtgggcgagttgctgaagaagtccagcaatatatt
gctcagtatcttcaaagtgaaaatgtcagaacttacttgattggacctcaaggacctcca
gggcctaagggagacagtgggcaagatgtagactatgctgaattggccagccgtgtcatg
agctacattcgaggatctggccttacttcatcggacggcgggcaaggatttgtcggtcca
agggtcacctatgatgaaatcctctcagtgttaaggagctctggattacagattggtgtt
cctgggcctccaggtccaccaggccaaccaggattgccaggatctggttatggcgatata
acagctttgcttgaaaattctgagttcagaggaattgttggcccacctgggccaccaggc
caaccaggacgtccaggtcgtgttggttcaccaggtccacctgggcctatgggaccgcca
ggaaatcctgaaacaagcagaactagttttggtgtagaagaaatttcatcatatttgcaa
agtgttggatacatttcaggacctccaggaccaccaggtcccccaggaccaccgggatcg
ccgggatcacctggtggtgggggcggcttggtttcttatgccgagaatgcctacagtagt
gatcgcttacggactgagcttattgaatacctgacaagtgacaatatacgtagatatatc
agtggaccagcaggtccgccaggccctcctggaccccaaggattgcgtggaccaaaggga
gatagtggcatcatttccccatcatctgggtcttcactctcatccggttactcaatctct
tctggatcatcccagtcatctggaagttcttttggctcatcctcagattcatccttcctg
ctggattatgatgaagtcgcaaatcgtgtgacagaaaaaatccagagtcaaggacttctt
gcggaggtgtcatacaacattgcaagaggcaatgttgcaggaccccaaggacctccagga
cctcaaggaccacctggaatctgccaagtatatgcaacccatgcaaacataactactgat
ctcatggaacttttcagagctcatggcacaattcagggaccccctggtcttacaggacag
aaaggtgaaagaggattcccaggagccaaaggtgacagaggaccaacaggatatactggt
gagccaggaccaatagggcacaaaggggagaaaggggacacattttacgtgggaaagcgc
aaaagaagaagcgtcggtgtttga
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integrated database retrieval system
