Xenopus tropicalis (tropical clawed frog): 100492061
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Entry
100492061 CDS
T01011
Symbol
ptch1
Name
(RefSeq) protein patched homolog 1 isoform X1
KO
K06225
patched 1
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
100492061 (ptch1)
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Gene cluster
GFIT
Motif
Pfam:
Patched
Sterol-sensing
Motif
Other DBs
NCBI-GeneID:
100492061
NCBI-ProteinID:
XP_031746817
Xenbase:
XB-GENE-488222
UniProt:
F7DZP4
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All DBs
Position
1:complement(135813286..135893523)
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AA seq
1436 aa
AA seq
DB search
MASAAYAAELGGSGEPAAQPRVVRRRGRSRGERRIVAPPDQDYLQRPSYCDANFALQQIS
EGKATGRKAPLWLRAFFQRQLFKLGCYIQKNCGKFLVVGLLIFGAFAVGLRAANLETNVE
ELWVEVGGRVSRELNYTRQKIGEEAMFNPQLMIQTPLEDGANVLTTEALLQHLHSALEAT
KVQVYMYNKPWKLEKLCFKSGELITEAGYVSQIIESLYPCLIITPLDCFWEGAKLHSGMA
YMPGKGFLQWTNFDPLGLLEELKKGKLHIDTWEEMINKAEVGHGYMDRPCLNPSDDKCPN
TAPNKNSTKPVDVALILNGGCYGLSRKYMHWQEELIIGGTVKNASGQSVSALALQTMFQL
MTPKQMYEHFKGYEEVSHINWNEDKAAAILEAWQRTYVQVVHQSVPQNSSQKVLPFTTTT
LDDILKSFSDVSVIRVASGYLLMLAYACLTMLRWDCAKSQGAVGLAGVLLVALSVAAGLG
LCSLIGISFNAATTQVLPFLALGVGVDDVFLLAHAFSETGQNKRIPFEDRTGECLKRTGA
SVALTSISNVTAFFMAALIPIPALRAFSLQAAVVVVFNFAMVLLIFPAILSMDLYRREVR
RLDIFCCFSSPCVSRVIQIEPQAYTDNNDNTRYSPPPPYSSHSFAHETQITMQSTVQLRT
EYDPRTQLYYTTAEPRSEISVQPAAPSPQDVSGQTPESTSSTRDLLSPFSESGVHCIEPP
CTKWTLSSFAEKHYAPFLLKPNTKVAVILVFLALLSVSLYGTTRVRDGLDLTDIVPRETR
EYDFIATQFKYFSFYHMYVVTQKADYPRAQRLLYELHKSFAGVKYVLLEGNKQLPRMWLH
YFRDWLQGLQDTFDREWEAGKITHNDYRNASDDAVLAYKLLIQTGNSDKPINLNQLTKQR
LVDTDGIIQPNAFYIYLTAWVSNDPVAYAASQANIRPHPPEWLHDKADDRPETRTIRAAE
PIEYVQFPFYLNGLRETSDFVEAIEKVRAICNNYTSLGVSSYPNGYPFLFWEQYIGLRHW
LLLSISVVLACTFLVCAVFLLNPWTAGIIVMVLALMTVELFGMMGLIGIKLSAVPVVILI
ASVGIGVEFTVHVALAFLTAIGDKNRRAVLALEHMFAPVLDGAVSTLLGVLMLAGSEFDF
IVRYFFAVLAILTLLGVLNGLVLLPVLLSYFGPYPEVSPTNGRDRLEFPQEPPPNIVRFP
VHPRPTQNGSDSSDSEYSSQTTVSGISEELHQYDSQQCSRASTNQVFLEARRNPAFPRST
AVQQNNRHNPPNQNTPPNQEPRTQQQWRSNRNQRWDSTEGSRPPPYRPRRDAFASSTEEH
AGPSTSRDRSGHRSHSHNMRKTAFAPGGASVPAYGQPITTVTASASVTVAVHPSVCSHSS
HGSYPFYGGYHENDHGHFEDPHVPFNVRYERRDSKVEVIELQDVECEERTQGNASK
NT seq
4311 nt
NT seq
+upstream
nt +downstream
nt
atggcctcggctgcctatgccgcggaattgggtggcagtggggagccagctgcccagccg
agggtagtcaggaggagaggaaggagcaggggggagcgcagaatagtagcgccgcctgac
caggactatctgcagcggccgagctactgcgatgcgaatttcgcccttcagcagatatca
gaggggaaggctacaggaagaaaagctccattgtggctaagagcattctttcaaagacaa
ttgtttaaacttggttgttacatacaaaaaaactgcggaaaatttctggttgtgggcctt
ttgatatttggtgctttcgctgttggattaagagcagctaatttagagaccaatgtggaa
gaactgtgggttgaagttggtggaagagtaagccgcgaattaaattacactcgccagaag
ataggagaggaggctatgtttaatccacagcttatgatccagactcctcttgaagatggt
gctaatgtcctgacaacagaagctctcctgcaacatctgcactctgcacttgaagccacc
aaggtgcaagtctacatgtacaacaaaccttggaaattggaaaaattatgctttaaatca
ggtgaacttattacagaagcaggatatgtaagccagattatagaatcgttgtatccatgt
ttaatcatcacaccactggattgcttttgggaaggcgcaaagcttcactctggaatggca
tacatgccaggtaaaggctttttgcagtggacaaactttgaccctttggggttgctggaa
gagttaaagaaaggaaaacttcatatagacacctgggaggaaatgataaacaaggcagaa
gttggccacggttatatggacagaccttgtttgaacccatcagatgataagtgtccaaac
actgcacccaacaaaaattcaaccaaacctgtagatgtagcccttattctaaatggtgga
tgctatggactctcaagaaaatatatgcactggcaagaggagttgatcattggtggcaca
gtgaagaatgctagtggacaaagtgtcagcgccctggcattgcagactatgtttcaacta
atgactcccaaacaaatgtatgagcacttcaagggttatgaagaggtttcccacataaat
tggaatgaagacaaagcggctgcaatcttggaggcctggcaaaggacctatgttcaggtt
gtacatcaaagtgttccacagaactcctcacagaaagttctcccttttactacaactaca
ctggatgatattctcaagtcattctccgatgtgagcgttatcagagttgcaagtggctat
ctgctgatgcttgcctatgcctgtttaaccatgctgaggtgggactgtgccaagtctcag
ggtgccgtagggctagcaggagtcttgctggttgcgctttcagtggctgctggattgggt
ctgtgttcattgattggaatttcctttaatgcagcaacaactcaggttttgccttttctc
gctcttggggttggtgtagatgatgtcttccttttggcacatgcttttagtgaaactggg
cagaataaaaggattccatttgaggacaggactggtgagtgtctaaagcggacaggagca
agtgtagcccttacgtctattagcaatgtgactgcattcttcatggctgccttgatacct
attcctgcactgcgggcattttccctccaagctgctgttgttgtggtgtttaattttgcc
atggtcttgctgatatttcccgctattctaagcatggacctctatcgcagggaagtccgc
aggcttgatatcttctgttgcttcagcagtccctgcgtgagcagagtgattcagattgaa
ccccaggcctatacggacaacaatgacaacacacgttacagcccacctccaccctacagc
agtcacagctttgctcatgaaacacaaatcacaatgcagtcaacagtccagctacggacc
gaatatgatccacgaacgcagttgtattacaccacagcagagcctcgatctgaaatatca
gtgcagccagccgcaccatcacctcaggatgtaagcggccagactccagagagcaccagt
tccactcgagacctgctttctccattctctgaatccggagtgcactgcatagagccccca
tgcacaaagtggacattgtcttcctttgcagaaaagcactacgctccattcctgttaaag
ccaaacactaaagttgcggtcatattggttttcttagcccttcttagtgtcagcctttat
ggaactactcgagtgcgagatggactagatttgaccgacattgtaccgagagaaaccagg
gaatatgactttattgccacgcagttcaagtacttttcgttttaccacatgtatgtagta
acacagaaagcagactatcctcgtgctcagcgcttgctttatgaacttcacaagagcttt
gccggggtgaaatatgtgttgctggagggtaacaaacagcttcctaggatgtggctgcat
tactttcgagattggctgcaaggattgcaagatacgtttgatcgtgaatgggaggctggg
aaaattacacacaatgactacagaaatgcttctgatgatgctgtgcttgcttacaagctc
ctaatacagacaggcaattctgataaacctattaacctcaaccagctgactaaacagcgg
ttggtggatacagatgggattattcagccaaatgctttctacatctacttaacagcctgg
gtgagtaatgaccctgtagcctatgctgcttcccaggccaacatccgcccacaccctcct
gagtggctccacgacaaagcagacgataggcctgagaccaggacaattcgtgcagctgaa
cctatagaatatgtccagtttcctttctacctcaatggtctacgggaaacatccgacttt
gtggaggctatagaaaaagtgagggcaatctgtaacaactatacaagccttggggtgtcg
agctacccaaatggttaccctttcctgttctgggagcaatacattggtctccgtcactgg
ctgctgttgtccatcagtgtggttctggcctgtacgtttctggtgtgtgctgtctttctg
ctgaacccttggactgctggaatcattgtcatggtgttggcccttatgacagtggaactg
tttggcatgatgggactcatagggattaaactgagtgcagtgcctgtagttatcttgata
gcttcagttggaattggagtggaattcactgttcatgttgctttggcattcctcactgct
attggggacaagaatcgcagagctgttcttgctttggagcacatgtttgcacctgttctg
gatggggctgtatctactctattgggagttctaatgcttgctggatcagagttcgacttt
attgtcaggtacttttttgctgtcctggcaattttaactcttttgggtgtattaaacggc
ttggtgctacttcctgtacttctgtcttattttgggccttatcctgaggtctctccaact
aatggcagagatagacttgagtttcctcaagagccaccaccaaatattgtaagattccct
gtgcatcctagaccgacgcagaatgggtctgattcctcagattcagaatatagttctcag
acaactgtatcaggaatcagtgaggagcttcatcagtatgattcccagcagtgttccaga
gcatcaacaaatcaagtcttcctggaagccagaagaaatccagcctttccacggtccact
gctgtacaacagaacaataggcataatccgccaaatcaaaacacaccacccaaccaagaa
cccagaactcaacaacaatggcgatccaataggaaccagagatgggattcaacagaagga
tcaaggccacctccatacagacctcgcagagatgcctttgcatcttctactgaagagcat
gctggtcctagtaccagcagggacagatcagggcacagatcccactcccataacatgcga
aaaactgcctttgctccaggaggtgcttcagtgcctgcatatggtcaacctattactact
gtgactgcctctgcttcagttactgttgctgtgcacccttctgtgtgtagccacagctcc
catggtagctaccccttttatggtggttaccacgaaaatgaccatggacattttgaggac
cctcatgtgccttttaatgtacgctatgaaagaagggactctaaagtagaagtaatagag
ctgcaagatgttgaatgcgaagaaaggacacagggaaatgcctcaaaataa
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integrated database retrieval system
