Xenopus tropicalis (tropical clawed frog): 100494697
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Entry
100494697 CDS
T01011
Symbol
tnc
Name
(RefSeq) tenascin isoform X2
KO
K06252
tenascin
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr04510
Focal adhesion
xtr04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
100494697 (tnc)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
100494697 (tnc)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
xtr00536
]
100494697 (tnc)
Glycosaminoglycan binding proteins [BR:
xtr00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100494697 (tnc)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
Fibrinogen_C
EGF_Tenascin
EGF_2
EGF
Pur_ac_phosph_N
hEGF
NDNF
fn3_2
Motif
Other DBs
NCBI-GeneID:
100494697
NCBI-ProteinID:
XP_002935248
Xenbase:
XB-GENE-1002816
UniProt:
A0A6I8Q0Y8
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All DBs
Position
8:35409164..35469511
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AA seq
1738 aa
AA seq
DB search
MGVPIQVYACLIFLLSAEVNCGLVRKIIRQKRESGLNISLPEDNQPVVFNHVYNINVPMG
SLCSVDLDPTSTKDNELSPEVGKNYQEHNLNGENQIVFTHRINIPRRACGCASAPDIKDL
LTRLEELEGLVSSLREQCTTGAGCCSSAQGVLETKPYCNGRGNYSSEAKACICEPGWTGL
NCTEIMCPGQCNNRGVCVNGACVCSPGFFGEDCSEVACPDDCNDQGKCVNGRCVCFEGYG
GEDCKEEVCPLPCGEHGKCVNGQCVCDENFIGEDCSEPRCPNNCNNRGRCVDNECVCDDP
YTGEDCSELICPNDCFDRGRCVNGVCYCEEGFTGEDCGQLACPNNCNNHGRCVNGLCVCE
TGYTGDDCSELACPDNCNNRGRCINGQCVCDEGYTGENCGELRCPNDCNNRGRCVNGQCV
CDDAYIGSDCSDLRCPNDCNNRGRCVNGQCVCDEGFIGDDCGELRCPDDCNDRGRCVNGQ
CVCDEGYTGLDCGELRCPNDCNNRGRCENGQCVCDEEFTGEDCSELRCPNDCNNRGRCVN
GQCVCDTLFMGDDCGELRCPDDCNNRGRCIDGQCVCDEGFTGDNCAELTCLDNCHNQGRC
IDGQCVCDEGFTGDFCSEVSPPKDLKVIDVTTKTMNLEWQNKMRVNEYLVSYVPTSPGGL
ELDFRVPGDQTAATIRELEPGVEYFVRVYAILRNQKSIPVSARVSTHLPTTDDLRFKSVR
ETFVDVEWDPLDISFDTWQLIFRNTKEENGEITTSLERPVTSFVQTGLAPGETYEVSIQV
VKNKTQGPPLTKVTTTRLDAPSQVEVNDVTDTSALITWVKPLAEIDGISLSYGTENEPIT
TVELTEDETQYSMNGLRPDTEYEVTLISRRREMTSSPATETFTTDLDTPKNLRRVSNTDS
SITLDWKNSQANVEYYRIKYAPLSGGDHEETIVPRSNEATSKTTLTGLRPGTEYGIGLTA
VKQDKESLPATINAATDLDAPKDLEVTGATETTLDLRWKLPVAKFDHYRLTYTSTTGEKE
VQVPGNAITHKLSGLEPGKEYSLSLVAEKGRHKSKPASVVGRTENIPEVGDLAVSDVTTN
SFDLSWKATSDSFEEFVIEVIDTNRLFEPITLNVSGNLRTSSVSGLLPKTDYSISLFGIV
HGLRTQAISTSATTEPEPEVGNLLVSKITSDSFHLSWNADESGFDNFILKIRDAKQQFEP
ITLTVPGSERSSLVTGLRDGTEYDIELVGVASGQRSPPIKGMATTALGSPKGLSFSDITE
NSAKVTWVAPRIRVEKFLITYIPVSGGSPNTVEVDGSKTQSTLVNLHPGVEYIVSIVSVQ
GSEESEPASGTFTTALDSPSGLKVVNITESDALALWQPSLASVDNYVFSYSAKNAPAVTH
SISGNTVENDLIGLHPSTEYTVKVYAVRGQHRSAEISTKFTTALDGPRDLSASEIQSESA
LLTWKPPRSTITGYVLIYESVDGTVKEVVVGPDTTSYRLLDLSPSAQYIARVQAINGDRR
SKEIQTIFITIGLLYPYPKDCSQALLNGEADSGLYTIYVNGDQSQPMEVYCDMSVDGGGW
IVFLRRTDGSEEFYRNWKTYSAGFGNINNEFFMGLENLHKLTSLGQYELRVDLRDNDETA
YAVYDKFSVGDAKSRFRLKVEGYSGTAGDSMTYHNGRSFSTFDKDNDSAITNCALSYKGA
FWYKNCHRVNLMGRYGDTNHSQGVNWFHWKGHEYSIQFAEMKIRPVSFRNLEGRRKRA
NT seq
5217 nt
NT seq
+upstream
nt +downstream
nt
atgggggttcccatacaggtgtatgcctgtctaatttttctcctaagtgcggaggtaaac
tgtggtcttgtcagaaaaattattcgtcagaaaagggaaagtggtctaaacatttccctt
ccagaagataaccagcccgttgtttttaaccacgtgtacaatattaatgtccctatgggt
tccttgtgttcagttgacttggatccaacaagcacaaaagataatgagctctctccagaa
gttggcaagaactaccaggagcataatttaaatggtgaaaatcaaatagtttttactcac
cgtatcaacattcctcgaagagcatgtggctgtgcatcggcccctgatatcaaggacctt
ctgaccaggttggaagagttagaaggactggtatcatctcttagagagcagtgcactaca
ggggctggatgctgttctagtgcacaaggtgttctagaaaccaaaccttattgcaatgga
cgtggcaattacagttctgaagcaaaagcgtgtatttgcgaacctggatggactgggctc
aactgcacagaaataatgtgtcctgggcaatgcaataataggggtgtgtgtgtgaacggt
gcatgtgtgtgtagcccaggtttctttggggaggactgtagtgaggtggcttgtccagat
gactgcaatgaccagggtaaatgtgtcaatggccgttgtgtttgctttgagggctatgga
ggagaagactgcaaggaagaggtatgcccattaccctgtggtgaacatggcaaatgtgtg
aatggacaatgtgtgtgtgatgaaaattttataggggaagactgcagtgagcctcgctgc
ccaaataactgtaacaatcgtggacgttgtgtggataatgagtgtgtctgtgatgatccc
tacacgggagaggactgcagtgaacttatatgccccaacgactgctttgatcgtggccga
tgtgtgaatggagtatgctattgtgaagaggggtttactggagaggactgtggtcaactt
gcttgccccaataactgcaacaaccatggccgctgtgtgaatggattatgtgtctgtgaa
actggctatactggagatgactgcagtgaacttgcttgtccagacaactgcaataaccgc
gggcgctgtataaatggtcagtgtgtttgtgatgaaggttacacaggagaaaactgtgga
gaactaagatgtccaaatgattgtaacaacagagggcgttgtgttaatgggcagtgtgta
tgtgatgatgcctacataggatctgattgttctgatcttagatgtcctaatgattgtaat
aacagaggccgctgtgttaatggacaatgtgtttgtgatgaaggattcataggggatgat
tgtggtgagcttaggtgccctgatgactgtaacgatagggggcgatgtgttaatggacaa
tgtgtgtgtgatgaaggatatacaggcttagactgtggggagcttaggtgtccaaatgac
tgtaataacaggggacgatgtgaaaatggacagtgtgtgtgtgatgaagaatttacgggt
gaagattgttctgaactgagatgccccaatgactgtaacaacaggggtcgctgtgttaat
ggacagtgtgtgtgtgacactttattcatgggtgatgactgtggtgaactgcgctgccct
gatgactgcaataacagaggacgctgtattgatgggcaatgtgtgtgcgatgaaggattt
acaggggacaactgtgctgaactaacctgccttgataattgccataaccaaggccgttgc
attgatggacagtgtgtctgtgatgaaggtttcactggagacttctgctcagaagtttct
ccaccaaaggacttaaaggtgattgatgtgacgacaaaaaccatgaatcttgaatggcaa
aacaaaatgcgagtcaatgaatatcttgtttcatatgttcctaccagccctggagggttg
gagcttgattttagagttccaggggaccaaacagctgccactattagagaacttgaacct
ggggtggagtattttgtacgtgtatatgcaatcctcagaaatcagaagagtattcctgtg
agcgcaagggtatcgactcacctcccaactacagatgacttaaggtttaaatctgtgaga
gaaacatttgttgatgtggaatgggatccactggacatttcttttgatacttggcaactc
atcttcaggaacacaaaagaggagaatggcgagataaccaccagcttagaaagacctgtc
acatcttttgtgcaaactggacttgcaccaggggagacctatgaagtgtctatacaagtt
gttaaaaacaaaacccaagggccacccttaactaaagtgaccaccacaagattggatgca
ccaagtcaggttgaagtaaatgatgttactgatacttctgctttaataacctgggttaag
cccctggcagaaatcgatggtatttcgttgtcttatggaactgagaatgagccaataacc
actgtggaactgactgaggatgaaacacagtattcaatgaatggtttacgaccggacaca
gaatatgaagtaacacttatctctcgacgcagagaaatgacaagttccccagcaaccgag
actttcacaacagacctggacactccaaagaacttgcgacgggtctcaaatacggattcc
agtataactttagactggaaaaacagtcaagccaatgttgaatattacagaattaagtat
gcaccactctctgggggagaccatgaggaaactatagtacccagaagcaatgaagctacc
agcaaaacaacactgacagggttgagacctggaactgagtatggaatagggttgacagct
gtgaagcaagacaaagaaagtttgccagctacaatcaatgctgcaactgaccttgatgct
cccaaggatttggaagttactggggccactgaaacaaccttagacctaagatggaaacta
cctgtagctaagtttgaccactatcgcctcacttatacatcaactactggtgagaaggaa
gttcaggtcccaggaaatgccatcactcataaactcagtgggcttgaacctggcaaagaa
tacagtctatctcttgtagctgagaaaggaagacacaagagcaagcctgccagcgtggtt
ggtagaactgaaaacattccagaagttggtgatttagctgtctctgatgtcactacaaac
agctttgatctgtcatggaaagcaacctcggattcatttgaagaatttgttattgaagtg
attgataccaacaggttatttgaaccaataacactgaatgtctcaggcaacctcagaaca
tcatctgtctctggactgttaccaaagacagattacagcatcagcctctttggcattgtc
catggtctgcgcacacaggccataagtacttctgctaccacagagccagagcctgaggtt
ggcaatcttctagtttccaaaataacttcagacagtttccacctatcatggaacgctgat
gagagtggttttgacaattttatacttaaaataagggatgccaaacagcagtttgagcct
ataactctaactgtccctggcagtgaacgttcttcattggtaacaggattgagagatggt
acagagtatgacattgaactggtcggcgttgccagtggtcaacgctctcctcccataaaa
ggaatggcaactacagctctaggctctcctaaaggactttcattctctgatataactgaa
aacagtgctaaagttacctgggtagcaccaaggatcagggtggaaaaattcctgatcaca
tatattcctgtgtctggaggttctcctaacactgtggaagtagatgggtctaaaactcag
tcaactttggtaaatctccatccaggtgtagaatatattgtgtctattgtatctgtgcaa
ggaagcgaagaaagtgagccagcttctgggactttcaccacagctctggacagtccatcc
ggtcttaaggttgtaaacattacagagtcagatgcactggccctctggcaaccatctttg
gcatctgtggacaattatgtcttctcctactctgcaaagaatgcacctgcagtaacacat
tccatctcaggcaatactgtagagaatgatttgattggtctgcatccctctaccgaatat
actgttaaagtctatgctgtcagaggccaacatcggagtgctgaaatctctacaaaattc
accacagcccttgatggtccaagagatttgagtgcaagtgagatccagtcagaatcagca
ttgctcacctggaaacctccaaggtcaacaattaccggatatgtgctaatctacgagtct
gtggatggaaccgtcaaggaagttgttgtgggtccagataccacttcttacagactactc
gatctaagcccatctgctcaatatattgcaagggttcaagcgataaatggtgacagaaga
agcaaggagatccaaaccatttttataacaattgggctactttatccatatccaaaggac
tgttcccaggctttgctgaatggagaagcagactctggtttatacacaatttatgtaaat
ggtgaccagtctcagcccatggaggtatactgcgacatgagtgttgatggaggaggatgg
attgtatttttacggcgtacagatgggtcagaagaattttacagaaactggaagacatac
agtgcaggatttggaaatattaacaatgaatttttcatgggtctggaaaacctgcataaa
ctgacctccctgggtcagtatgagctacgagtagaccttcgtgataatgatgaaactgca
tatgcagtctatgataagtttagcgttggagatgcaaagagtcgcttccggctcaaggtt
gaaggttacagtggtacagcaggagattccatgacttaccacaatgggagatcattttcc
acatttgacaaggacaatgattcagctattacaaactgcgctttgtcatacaaaggggct
ttctggtacaagaactgtcacagagtaaaccttatgggtagatacggtgacacaaaccac
agtcagggtgtcaactggttccactggaagggacatgaatactcaattcagtttgcagaa
atgaagataagaccagtaagcttcagaaatcttgaaggaaggcggaagagagcataa
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integrated database retrieval system
