Xenopus tropicalis (tropical clawed frog): 100496998
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Entry
100496998 CDS
T01011
Symbol
cdhr1
Name
(RefSeq) cadherin-related family member 1 isoform X1
KO
K16501
cadherin-related family member 1
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
xtr04515
]
100496998 (cdhr1)
Cell adhesion molecules [BR:
xtr04515
]
Cadherins
Cadherin related
100496998 (cdhr1)
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Gene cluster
GFIT
Motif
Pfam:
Cadherin
RibLong
Big_9
GAPT
Cadherin_4
Cadherin_2
LAX
Motif
Other DBs
NCBI-GeneID:
100496998
NCBI-ProteinID:
XP_031762258
Xenbase:
XB-GENE-478982
UniProt:
A0A6I8SM54
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Position
7:52455209..52521375
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AA seq
872 aa
AA seq
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MLPSMMKHEWNLCPSIFFSLFHICLSAHTNYGPYFFDNGPGSTDGNMALLSLSEDTPIGS
YIYTLNGSDPDGDPVTFGLTFEPGSKHYFAVDPDNGNVTLIEELDREKQDEVEVIVSISD
GINKVSEKVRVLVTDANDESPEFLNTPYIVTVPEDTPPGSSIFKIEAVDKDTGSGGSITY
IIQEMHSSKFTIDRHSGVLRLKAGMSLDFEKSRTHFVSVLAKDGGGKLRGKNQVFTSTTT
VTINVEDVQDSPPVFVGTPYYGYVYEDTTMGSEVLTVMAYDGDRGNPNTINYSIVDGSDE
AFTINNATGGITVIKNPNELKKEVYELKIQVSEITPEGDIVAHAFTVATVRVVDLNNHPP
TFYGENGPQNRFELTMYEHPPEGEILRGLKITVNDSDQGANAKFNLRLVGPGGIFRVVPQ
TVLNEAQVTIIVENSAGIDYEKFHLLTFKLLAIEVNTPEKFSSTADITIHLLDINDNVPR
FSSEYYIARIPENSPGGSNVVAATATDLDSGLWGEIKYSIYGPGSDPFLIHPSTGIIYTQ
PWASLDAEVTSKYNFYVKAEDTEGKYSLAEVFVTVLDINDHSPEFSENIQEKTLIIGTPV
KIEATDHDAEEPNNIVDYSIMQADPSNVFDIDQSTGEIKLKSYIRSLDIIQNITQNKDCK
WSVVVQAKDRGSPSFSTTAVVKIDVTEETLLHKGPMAAFLMQSKDNPMKALGVLAGVMAI
MVVITIFISTAMFWRNKKSNRVMPLRRIIKRRRNEHPPRTARTEWLKFKKSNNSADKFTI
QEMESGLKNENRNNNYQGIPVPPRVPCPPPPPRLMPKVSKPEWSLPTVSGSLTPKIIDQK
MKEKVPSASAALVSELKLMLEKKNAGSSMSFY
NT seq
2619 nt
NT seq
+upstream
nt +downstream
nt
atgctgccttccatgatgaagcatgagtggaacctatgcccaagcatctttttttcctta
ttccacatttgcttatcagctcataccaattatggcccctatttttttgataatggaccc
ggaagcactgatggaaacatggccctacttagtttgtctgaagacacacccattggttcg
tacatctatactttaaatggaagcgaccccgatggagatcctgtgacatttgggctcaca
tttgaacctggttccaaacattattttgctgttgatccggacaatggaaatgtcacatta
attgaggaacttgacagagagaaacaagatgaggttgaagtcattgtcagcatttcagat
gggataaataaagtttctgaaaaagtcagagttctggtaactgatgccaatgatgaaagc
ccagagttcctcaatacgccatatattgtgactgtacctgaggacactcctcccggaagc
agcattttcaagatagaagcagtagacaaagatacagggtctggaggaagtatcacctat
ataatacaggaaatgcatagcagcaaatttacaattgatcgtcacagtggagttttgaga
ttaaaagcgggcatgtcattagacttcgaaaagtcaagaactcattttgtgtcagtatta
gcaaaggatggtggtgggaagcttcgaggaaagaaccaggttttcacatcaaccactaca
gtaactattaatgttgaagatgtgcaggattcgcctccagtgtttgtaggaacaccatat
tacggctatgtttatgaagacaccacaatgggatctgaagtacttactgtcatggcatat
gatggagacagagggaaccctaatactataaactattccatagtagatggaagtgatgaa
gcttttacaatcaataatgccactggaggaattacagttataaaaaacccaaatgaactt
aaaaaagaagtatatgagcttaaaattcaggtatcagaaattacacctgaaggggatata
gtagctcatgccttcactgttgcaactgtaagagttgttgatctcaataaccaccctcca
acattctatggggaaaatggtccccagaacagattcgaacttacaatgtatgaacatcca
ccagaaggagagatactaaggggtctaaaaatcactgtcaatgattctgatcagggagca
aatgctaaatttaatctgcgcttggttggacctggtggcatattccgtgttgttccacaa
actgttttgaatgaagcccaagttacaattattgtggaaaattctgcaggaatagattat
gaaaagtttcacctgcttacatttaagcttcttgctattgaggtgaacacccctgaaaaa
tttagctcaacagctgatataaccatccatcttctggacatcaatgacaatgtccctagg
ttctcttcagagtattatattgccaggatcccagagaattctccagggggctccaatgtt
gtggctgcaactgccacggacctggattcaggactttggggtgaaatcaagtattcaatt
tatggcccaggatctgaccctttccttatccatccttcaactggaatcatctatacccaa
ccttgggcttctttagatgcagaagtcacctccaagtacaacttttatgtaaaagctgaa
gatacggaagggaagtacagcttagctgaggtgtttgtgacggtcttggatatcaatgat
cacagtccagagttcagtgagaatattcaagaaaagaccttgattattggcactccagtt
aaaatagaggcaacagaccatgatgcagaagaaccaaacaacattgttgattattccatc
atgcaagcagatccatctaatgtttttgatattgaccaaagtactggagagattaagcta
aagtcttacataaggtccctagatattattcagaatataacacaaaataaagactgcaag
tggtcagtagtggttcaagcaaaagacagaggctctccatccttcagcacaactgcagta
gtcaagattgatgttacagaggagacacttcttcacaaaggccctatggctgcctttttg
atgcaaagcaaagataatccaatgaaagccctaggagttctagctggtgttatggcaatt
atggtggtcattacaatcttcatctccactgccatgttctggcgcaataaaaagtcaaat
agagtaatgcctctgagaagaataatcaaaagacgaagaaatgaacaccctccaagaaca
gccaggactgagtggttgaagttcaaaaaatccaacaattctgcagataaatttaccatc
caggaaatggaatcaggccttaagaatgaaaatagaaacaacaattaccaaggtatccct
gttccaccaagggtaccttgcccacctccacccccacgcctaatgccaaaggtcagtaaa
ccggaatggagcctgcctacagtttctgggtccttgactcccaagatcatagatcagaag
atgaaggagaaagtccccagtgccagtgctgctcttgtctctgaactgaaactaatgttg
gagaagaaaaatgcaggaagctcaatgtctttttattag
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