KEGG   Xenopus tropicalis (tropical clawed frog): 733934
Entry
733934            CDS       T01011                                 
Symbol
u2af1
Name
(RefSeq) U2 small nuclear RNA auxiliary factor 1
  KO
K12836  splicing factor U2AF 35 kDa subunit
Organism
xtr  Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:xtr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    733934 (u2af1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:xtr03041]
    733934 (u2af1)
Spliceosome [BR:xtr03041]
 Complex A
  U2 snRNP components
   U2 related factors
    733934 (u2af1)
 Complex B
    733934 (u2af1)
SSDB
Motif
Pfam: zf-CCCH RRM_1 Torus zf_CCCH_4 zf-CCCH_2
Other DBs
NCBI-GeneID: 733934
NCBI-ProteinID: NP_001039113
Xenbase: XB-GENE-877053
UniProt: Q28C63
LinkDB
Position
2:complement(1499179..1505315)
AA seq 243 aa
MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQ
SADGLRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRRE
EDAEKAVKDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRE
LRRELYGRRRKKSRERRSRSRDRGRGGGGGGGGGGGGGGGGGGGGGRDRDRRRSRDRERS
GRF
NT seq 732 nt   +upstreamnt  +downstreamnt
atggcggagtatctggcctccatcttcggtaccgagaaggacaaggttaactgctcattt
tactttaagattggagcatgtcgccatggagaccgatgctcccgacttcacaacaagccc
accttcagtcagactatcgctctgctgaacatttaccggaacccacagaattcctcccag
tcggcagatggacttcgctgtgctgtgagcgatgtggagatgcaggaacattatgacgag
ttcttcgaggaggtatttacagagatggaggagaagtacggggaggtggaggaaatgaac
gtgtgcgacaacttgggagaccacctggtggggaacgtctatgtcaagttccgccgagag
gaagacgctgagaaggctgtgaaggatctgaacaaccgttggtttaacgggcagccaatc
cacgccgagctgtcccccgtcactgactttagggaggcctgctgccgccagtatgagatg
ggggagtgcacgcgcggggggttctgcaacttcatgcatctgaaaccaatctctcgagag
ctgcgcagggagttgtacggccgccgaaggaagaaatcccgggaacgtcgctctcgctcc
agagaccgcggcaggggaggcggtggtggtggcggaggaggcggcggcggtggtggcgga
ggaggcggcggtggcggcagagacagggaccggagaagatcaagagaccgcgagaggtcg
ggtcgcttttga

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