KEGG   Xylanimicrobium sp. FW10M-9: ET471_17040Help
Entry
ET471_17040       CDS       T05815                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
xya  Xylanimicrobium sp. FW10M-9
Pathway
xya03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:xya00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    ET471_17040
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:xya03400]
    ET471_17040
Enzymes [BR:xya01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     ET471_17040
DNA repair and recombination proteins [BR:xya03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     ET471_17040
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_C DNA_ligase_A_M
Motif
Other DBs
NCBI-ProteinID: QAY71524
LinkDB All DBs
Position
3668660..3671161
Genome map
AA seq 833 aa AA seqDB search
MAAPQTVTIDGHRLQLTNLDKVLYPATGTTKGEVLDYYARVAPVLLPHVRRRPATRKRWP
DGVEGQVFFQKNADRSTPSWVRTHRIQHKTSSNDYVLVDDVATLTWLAQTATLELHVPQW
QVGRTGVHLPPDRLVLDLDPGEGAGLAECAEVARLARAILRGMGLEPLPVTSGSKGIHLY
AALSAGSDPAGARPSSADEVSAVAHELARYLEAEHPDLVVSDMKKALRGGKVLVDWSQNN
GAKTTIAPYSLRGRPHPTVAAPRTWEELDDPGLRHLTFEEVLDRVAADGDLLAGLTQGHL
SQLEPTPAHLARFERLATYHAKRDPARTPEPFDAGDSPPGQTFVIQEHHARRLHWDFRLE
HEGVLVSWALPKGEPTDPAQNHLAVQTEDHPLAYGAFEGTIPGGEYGAGEVTIWDAGTYE
LEKWRDGKEVIVTLRSERRGARRLALIRTGRDEGDNQWLIHRTKTQPGAAEGDSPAARRQ
TVRPGARSDDELPGGPAGNPDVVVRLEPMLASAAEPADVRALQADPGGGDREWVFEMKWD
GYRTIAVAAPGPDGVPVARFTSRTGQDLTRTYPELAPLAGQVRGDLPVVLDAEIVALDAS
GRPDFRRLQQHTSKAELMVFDVLQVGDRSLLHAPYDERRALLGDVLDPERPVHVPAVFDG
DLDAALAFSRRLRLEGVMAKRRESTYLPGRRSRQWLKLKHTAAQEVVVVGWRPLHAGEPR
EDARYAGALLLAVPADDGALRYVGRVGTGFTDADRRALAERLTAVGRATPPLDGVPRPDA
ARARWVTPRIVGEVEFAEWTGDPATDPDARLRAARWRGLRPDKDPDDVVVERP
NT seq 2502 nt NT seq  +upstreamnt  +downstreamnt
gtggccgccccccagaccgtgacgatcgacgggcaccgcctccagctgaccaacctggac
aaggtgctctacccggccacgggcaccaccaagggcgaggtgctcgactactacgcgcgc
gtcgcgcccgtgctgctcccccacgtccgccgccggcccgcgacgcgcaagcggtggccc
gacggcgtcgagggccaggtgttcttccagaagaacgccgaccggtccacgccgtcatgg
gtgcgcacgcaccgcatccagcacaagacgtcgtcgaacgactacgtgctggtcgacgac
gtcgccacgctcacgtggctggcccagacggcgaccctcgagctgcacgtgccgcagtgg
caggtgggccgcacgggggtgcacctgccgccggaccggctggtgctcgacctcgacccc
ggcgagggcgccgggctggccgagtgcgcggaggtcgcacggctcgcgcgggcgatcctg
cggggcatgggcctcgaaccgctgccggtcacgtccgggtcgaagggcatccacctctac
gccgcgctgtcggcgggctccgacccggcgggtgcgcggccgtcgtcggccgacgaggtc
tccgccgtcgcgcacgagctggcccggtacctggaggccgagcaccccgacctggtggtc
agcgacatgaagaaggcgctgcgcggcggcaaggtgctggtcgactggtcgcagaacaac
ggggcgaagacgacgatcgcgccctactcgctgcgcgggcgcccgcaccccaccgtggcg
gcgccgcgcacgtgggaggagctcgacgaccccgggctgcggcacctcaccttcgaggag
gtgctcgaccgggtcgccgcggacggggacctgctcgccgggctgacgcaggggcacctg
tcccagctcgagcccacccccgcccacctggcccgcttcgagcggctcgcgacctaccac
gcgaagcgcgacccggcccggacccccgagcccttcgacgccggcgactccccgccgggc
cagacgttcgtcatccaggagcaccacgcccgccgcctgcactgggacttccgcctggag
cacgagggcgtgctcgtcagctgggcgctgcccaagggcgagcccaccgaccccgcccag
aaccacctggccgtgcagaccgaggaccacccgctcgcgtacggcgccttcgagggcacc
atcccgggcggcgagtacggcgccggcgaggtgacgatctgggacgccggcacgtacgag
ctcgagaagtggcgggacggcaaggaggtcatcgtcacgctccgcagcgagcgccgcggc
gcgcgacgcctcgcgctgatccgcacgggtcgcgacgagggcgacaaccagtggctgatc
caccgcacgaagacccagccgggcgcggcggagggtgacagtccggcagctcgtcgtcag
accgtgcgcccgggggcacggtctgacgacgaactgccgggcggacccgcgggcaaccct
gacgtcgtcgtccggctcgagcccatgctcgcctccgccgccgagccggcggacgtccgc
gccctccaggccgaccccgggggcggcgaccgggagtgggtgttcgagatgaagtgggac
ggctaccggaccatcgccgtggccgcgcccggccccgacggcgtcccggtcgcgcggttc
acgtcccgcaccggccaggacctcacacgcacctacccggagctcgcgccgctcgccggg
caggtccggggcgacctgcccgtcgtcctggacgccgagatcgtcgcgctcgacgcgagc
gggcgccccgacttccggcggctccagcagcacacgtcgaaggccgagctcatggtcttc
gacgtcctccaggtgggcgaccggtcgctcctgcacgccccgtacgacgagcgccgcgcg
ctgctcggcgacgtcctcgacccggaacggccggtccacgtccccgccgtgttcgacggc
gacctcgacgccgcgctcgcgttctcccgcaggctgcggctcgagggagtcatggccaag
cggcgcgagtccacctacctgccgggacgccggtcgcggcagtggctcaagctcaagcac
acggccgcgcaggaggtggtcgtcgtcggctggcggccgctgcacgcgggcgagccgcgc
gaggacgcccggtacgccggcgcgctcctgctcgccgtccccgccgacgacggtgcgctg
cgctacgtcggccgcgtcggcacgggtttcaccgacgccgaccgccgggccctcgcggag
cgcctcacggcggtggggcgcgcgacgccgccgctcgacggcgtcccccgccccgacgcc
gcccgcgcccgctgggtcaccccgcgcatcgtcggcgaggtcgagttcgccgagtggacg
ggcgaccccgccaccgaccccgacgcccgcctccgcgcggcgcggtggcgcgggctgcgc
ccggacaaggacccggacgacgtcgtcgtcgaacggccctga

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