Xylophilus rhododendri: GT347_24370
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Entry
GT347_24370 CDS
T06383
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
xyk
Xylophilus rhododendri
Pathway
xyk03030
DNA replication
xyk03430
Mismatch repair
xyk03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
xyk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GT347_24370 (dnaE)
03430 Mismatch repair
GT347_24370 (dnaE)
03440 Homologous recombination
GT347_24370 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xyk03032
]
GT347_24370 (dnaE)
03400 DNA repair and recombination proteins [BR:
xyk03400
]
GT347_24370 (dnaE)
Enzymes [BR:
xyk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
GT347_24370 (dnaE)
DNA replication proteins [BR:
xyk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
GT347_24370 (dnaE)
DNA repair and recombination proteins [BR:
xyk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
GT347_24370 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
SPO11_like
Motif
Other DBs
NCBI-ProteinID:
QHJ00847
UniProt:
A0A857JAA5
LinkDB
All DBs
Position
5273376..5276885
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AA seq
1169 aa
AA seq
DB search
MFVHLRLHTEFSVVDGTNRIDDVVKAAARDGQPALAITDLGNLFGAVKFYKAARGKGVKP
IIGAELYLEGIGADPAVLSKVVVLVQDWKGYLNLSELIARAWTKGVVKALAVCKLEWLRE
LNEGMILLAGAQAGPVGQALIRQDDSAAADAALLLAGIFPHRFYLEIQRAGRVDDEAHTV
AAVQLAARLNLPVVATHPTQFTEVDDYEAHEARVCISEGEILGNQRRVRKFTREQYFKST
AQMEALFADVPSAIANTVEIARRCSIVLDLGKPQLPDFPTPNNVPIADYFRIASFEGLEV
RLAHLYPDLAKRNAKRPEYVERLEFEINTILKMGFPGYFLIVGDFINWAKNNGCPVGPGR
GSGAGSLVAYALKITDLDPLEYKLLFERFLNPERVSMPDFDIDFCQGNRDRVIDYVKDKY
GKDAVSQIATFGTMAAKAAIRDVGRVMDMSYTFVDGISKLVPAKPGMSYTLAYPPETKKD
GDKNNYALELEPMLYERVRKEEDVKTVIEMAQKLEGMTRNIGMHAGGVLIAPGKLTDFCP
LYQQPGSDSAVSQYDKDDVEAIGLVKFDFLGLATLTILEIAREFIKKRHKGQELFAYENI
AIDDTATYRLFAEGKTEAVFQFESRGMQGMLRDAKPTRLEDLIALNALYRPGPMDLIPSF
VARKHGRETVEYPHPLVADMLSETYGIMVYQEQVMQTAQILGGYSLGGADLLRRAMGKKK
LEEMAMHREIFRKGAAVNGIAQDKADEIFDLMEKFAGYGFNKSHAAAYSLLAYHTGWLKV
HFRAEFYCANMTVEMDDTDKLRVLFEDAQKLGMTFEPPDVNRGGYRFEPVSNTVIRYGLG
AVKGTGQSAIEAVVAAREEGGAFSSLFDFCNRVDRQRINKRTVEALIKAGAFDAINPHRA
SMVASIDRAFEYAAAQAANVNQGGLFDMMDDGHGSSAQEPDLVEARPWGIKERLVLEKTA
VGFYLSGHLFDEVSREVRQFVRREIGELADSREPVTLAGIILELRVINGQRGKLALMKLD
DKSGVIEATADEGVLNTYRNLLKDDEMVIISGKLQPDRFTGGVRLKVEHVWDLATARCRF
GKFLRVAVNGKAPDIQRIVRDHPPVREVSEQGELLRGLEVRLSVRRETAGMEVGVDLKLD
ERSLFFPTDAALSSWMAQAEGGKAVIVYE
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atgtttgtacacctgcgcctgcacaccgagttttccgtcgtcgacggcaccaaccggatc
gacgatgtcgtcaaggccgctgcccgcgacggccagcccgctcttgccatcaccgacctc
ggcaacctcttcggggcggtcaagttctacaaggccgcgcgcggcaagggcgtcaagccg
atcatcggcgccgagctctatctggaaggcataggcgccgatccggcggtgctgtcgaag
gtggtggtgctggtgcaggactggaagggttatctcaacctgtccgagctgatcgcccgc
gcctggaccaagggcgtggtgaaggccctggccgtctgcaagctggaatggctgcgtgaa
ctcaacgagggcatgatcctgctggcgggcgcccaggccggcccggtgggccaggcgctg
atccgccaggacgattccgccgccgccgatgccgcgctgctgctggccggcatctttccg
catcgcttctacctggagatccagcgtgccggccgggtggacgacgaagcccacacggtg
gccgccgtgcagctggccgcgcgcctgaacctgccggtggtggccacccatccgacgcag
ttcaccgaagtggacgactacgaggcccacgaggcgcgcgtctgcatctccgaaggcgag
atcctgggcaaccagcgccgggtgcgcaagttcacccgtgagcagtatttcaagagcacc
gcgcagatggaggcgttgttcgcggacgtgccttcggccatcgccaacacggtggagatc
gcccgccgctgcagcatcgtgctggacctggggaagccgcagctgcccgacttccccact
cccaacaacgtgccgatcgcggactatttccgcatcgcctccttcgagggcctggaggtg
cgcctggcccacctctatccggacctggccaagcgcaacgccaagcgcccggaatacgtg
gagcggctggagttcgagatcaacaccatcctgaagatgggtttcccgggctacttcctg
atcgtgggcgacttcatcaactgggccaagaacaacggctgcccggtgggcccgggccgg
ggttccggcgccggctcgctggtggcctacgcactcaagatcaccgacctggatccgctc
gaatacaagctgctgttcgagcgcttcctgaacccggagcgggtgtccatgcccgacttc
gacatcgacttctgccagggcaaccgcgaccgcgtcatcgactacgtcaaggacaagtac
ggcaaggacgcggtcagccagatcgccactttcggcaccatggccgccaaggcggcgatc
cgcgacgtgggccgggtgatggacatgagctacaccttcgtggacggcatctccaagctg
gtgccggccaagccgggcatgtcctacaccctggcctatccgcccgagaccaagaaggac
ggcgacaagaacaactacgcgctggagctggagcccatgctctacgagcgggtgcgcaag
gaagaggacgtcaagaccgtcatcgagatggcgcagaagctcgaaggcatgacccgcaac
atcggcatgcatgccggcggcgtgctgatcgccccgggcaagctgaccgacttctgcccg
ctctaccagcagccgggcagcgattcggcagtgagccagtacgacaaggacgacgtggag
gccatcggcctggtcaagttcgacttcttgggcctggccacgctgaccatcctggagatc
gcccgcgagttcatcaagaagcgccacaagggccaggagctgtttgcctacgagaacatc
gcgatcgacgacacggccacctaccggctgtttgccgagggcaagaccgaagccgtgttc
cagttcgaatcccgcggcatgcagggcatgctgcgcgacgccaagccgacgcggctggaa
gacctgatcgccctgaacgcgctgtaccgcccgggcccgatggacctgatccccagcttc
gtggcccgcaagcacggccgcgagacggtggagtacccgcatccgctggtggccgacatg
ctgtcggagacctacgggatcatggtctaccaggagcaggtgatgcagaccgcccagatc
ctgggcggctattcgctgggcggcgccgacctgctgcgccgcgccatgggcaagaagaag
ctcgaagaaatggcgatgcaccgcgagatcttccgcaagggggccgcggtcaacgggatt
gcgcaggacaaggccgacgagatcttcgacctgatggagaagttcgcgggctacggcttc
aacaagtcgcatgccgccgcctattcgctgctggcgtatcacaccggctggctcaaggtg
cattttcgggcggagttctactgcgccaacatgacggtggaaatggacgacaccgacaag
ctgcgggtgctcttcgaggatgcgcagaagctcggcatgacgttcgagccgccggacgtc
aaccgcggcggctaccgcttcgagccggtcagcaacaccgtgatccgctacggcctgggc
gccgtcaagggcaccggccagtcggccatcgaggcggtggtggcggcgcgggaggagggc
ggtgccttctccagcctgttcgacttctgcaaccgggtggaccggcaacgcatcaacaaa
cgcacggtggaggcgctgatcaaggccggcgccttcgatgcgatcaacccgcaccgcgcc
tcgatggtggcctccatcgaccgcgccttcgaatacgccgccgcgcaggccgccaacgtc
aaccagggcgggctgttcgacatgatggacgacggccacggctccagcgcgcaggagccc
gacctggtcgaggcccggccctggggcatcaaggagcggctggtgctggagaagacggcc
gtcggcttctatctctccggccacctgttcgacgaggtctcgcgcgaggtgcgccagttc
gtgcgccgcgagatcggcgagctggccgattcgcgcgagccggtcacgctggccggcatc
atcctggagctgcgtgtcatcaacggccagcgcggcaagctggcgctgatgaagctggac
gacaagtccggcgtgatcgaggcgacggccgacgaaggcgtgctcaacacctaccgcaat
ctgctcaaggacgacgagatggtcatcatctccggcaagctgcagcccgaccgcttcacc
ggcggcgtgcgcctgaaggtggaacatgtctgggacctggccaccgcgcgctgccgcttc
ggcaagttcctgcgggtggcggtcaacggcaaggcaccggacatccagcgcatcgtgcgc
gaccatccgccggtgcgcgaggtgtccgaacagggcgaactgctgcgcgggctggaggtg
cgcctgtcggtgcgccgcgaaacggccggcatggaagtcggcgttgacttaaagttggac
gagcgttccctgttcttcccgaccgacgccgcattgtcgagctggatggcccaggccgag
ggcggaaaagcggtcatcgtgtacgaatga
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