Yersinia aldovae: AT01_1705
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Entry
AT01_1705 CDS
T03605
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
yal
Yersinia aldovae
Pathway
yal03410
Base excision repair
yal03430
Mismatch repair
yal03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
yal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
AT01_1705 (recJ)
03430 Mismatch repair
AT01_1705 (recJ)
03440 Homologous recombination
AT01_1705 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
yal03400
]
AT01_1705 (recJ)
DNA repair and recombination proteins [BR:
yal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
AT01_1705 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
AT01_1705 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AT01_1705 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHHA1
DHH
RecJ_OB
Motif
Other DBs
NCBI-ProteinID:
AJJ63438
LinkDB
All DBs
Position
complement(1818489..1820222)
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AA seq
577 aa
AA seq
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MTLKTQLRRREAVDDSHLPAHLPPLLRRLYASRGVKSPEELERGVKGLLAWQQLDGIDAG
VTLLQQALADRRRIVIVGDFDADGATSTALAVLALRSMGGSNIDYLVPNRFEDGYGLSPE
VVEQVAARGAELIVTVDNGISSHSGVDLAHALGIQVLVTDHHLPGETLPAAEAIINPNLA
GCDFLSKSLAGVGVTFYLMLALRARLRDCGWFEQRALAVPNLAELLDLVALGTVADVVPL
DANNRILVHQGLSRIRAGKCRPGIRALLEVANRDARQLAANDLGFSLGPRLNAAGRLDDM
SIGVALLLSDDIAQARALAIDLDSLNQTRREIEQGMQVEALQLCDQLERTSTELPYGIAM
YHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGLLKGSGRSVAGLHMRDALERLDTLNP
GLMLKFGGHAMAAGLSLEQDKFDEFRQRFADLVGEWMDASQLEGVIWSDGELKGNELSLE
TAELLRDGGPWGQSFPEPTFDGKFRILQQRLVGERHLKLMIEPLNGGPLLDGIAFNIDTT
LWPDSSVREVKLAYKLDINEYRGNRSVQLLVQHLWPY
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
gtgacgttgaaaactcaacttcgccgccgtgaggcggtggatgatagccatttgcccgca
cacttgcccccgttgctgcgtcgcctctatgccagccggggtgtaaaaagccccgaagag
ctggagcggggtgtcaaaggcttgttggcctggcagcaactggatggcattgatgccggt
gttactctgttgcagcaagcgttggctgaccggcggcggattgtcattgtcggtgatttt
gatgccgatggtgccaccagtaccgcgctggcagtgctcgcattacgcagcatgggcggc
agcaatatcgactatctggtacccaaccgctttgaagatggctatgggttgagtcctgaa
gtggttgagcaggtggctgcccgtggtgcggaactgattgtcacggtggataatggcatt
tcctctcattctggggtggatttggcacatgccttgggtattcaggtgttggtcactgat
catcacctgccaggggaaaccttgcctgcggctgaggctatcattaaccccaatctggct
ggttgtgattttctctccaaatcactggctggggtgggtgtcaccttttatctgatgctg
gcattgcgtgcccgccttagagattgcggttggtttgagcaacgtgcgttagctgtgccg
aatttggctgaattgctggatttagtcgcgctaggcaccgtggcagatgtggtgccactg
gatgccaataaccggattttggtgcatcaggggctaagccgtatccgggcgggtaagtgt
cggccgggtattcgcgcgttgctggaagtggctaaccgcgatgcgcgccagctagcagca
aacgatctgggtttctctctcggcccgcgcctcaacgcagccggccgtctggatgatatg
tccattggggttgcattgctgctaagtgacgatattgctcaagcacgcgcactggcaatc
gatctcgattcattgaatcagacacggcgtgagatagagcaggggatgcaggttgaagcc
ttgcagctatgtgatcaattagagcgcaccagcactgaattaccttacggtatcgcgatg
tatcaccccgaatggcatcagggtgtggtggggattctggcttctcgtattaaagagcgt
tttcatcggccggttattgcttttgccccggcgggcgacggcttactgaaaggctccggg
cgcagtgtggcgggcttgcatatgcgtgatgcacttgagcgtctcgatacattgaaccct
gggttgatgctgaagtttggtggtcatgcaatggcggcggggctatcgctggaacaggat
aaattcgatgagttccgccagcgctttgctgatttagtcggtgaatggatggacgcttcg
caattagaaggtgtgatttggtctgatggtgagctgaaaggcaacgaattatcactggaa
acggcagagttgctgcgcgatggtggcccgtgggggcaatccttccctgaaccgacattt
gatggcaaattccgcatcttacagcagcgattggtgggtgaacgccacctgaaacttatg
attgaaccgctaaacggcgggcctttgctggatggtattgcttttaatattgataccacc
ttatggccggatagcagtgtgcgtgaagtcaagctggcttataaacttgatattaatgaa
tatcgcggtaatcgtagtgtccagttgctggttcagcatttgtggccttattaa
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