Yersinia intermedia: CH53_1275
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Entry
CH53_1275 CDS
T03608
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
yin
Yersinia intermedia
Pathway
yin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
yin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CH53_1275 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
yin03019
]
CH53_1275 (pnp)
03016 Transfer RNA biogenesis [BR:
yin03016
]
CH53_1275 (pnp)
Enzymes [BR:
yin01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
CH53_1275 (pnp)
Messenger RNA biogenesis [BR:
yin03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CH53_1275 (pnp)
Transfer RNA biogenesis [BR:
yin03016
]
Prokaryotic type
tRNA degradation factors
CH53_1275 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
S1_2
KH_2
aRib
UPF0181
Spt6_S1
Motif
Other DBs
NCBI-ProteinID:
AJJ19990
UniProt:
A0A0T9LZQ5
LinkDB
All DBs
Position
complement(1462827..1464947)
Genome browser
AA seq
706 aa
AA seq
DB search
MLTPIIRKFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLT
VNYQERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSV
NPQVNPDIVALIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTTDELKESRLDLVVA
GTADAVLMVESEAQILSEDQMLGAVIFGHEQQQVVIENINALVAEVGKPKWDWHAEPVNE
ALHARVAELAEARLGDAYRITEKQERYTQVDAIKADVTEALLAQDESLDASEIQDILGDV
EKNVVRSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTAR
DAQNIDELMGERTDSFLLHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPSPSE
FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGENFVVLSD
ILGDEDHLGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQA
ISTPRGDISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGTTIEIEDDGTIKIAAT
DGDKAKHAIRRIEEITAEIEVGRIYAGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE
KVTDYLQMGQEVPVKVMEVDRQGRIRLSIKEATTPDAEAPAPEAAE
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
ttgctgactccgattattcgtaaattccagtacggccaacataccgttaccattgaaaca
ggtatgatggcgcgccaggcaacggctgctgtaatggtaagcatggacgacaccgcagta
ttcgtgactgttgttggccaaaagaaagccaagccaggtcaaagcttcttccctctgacc
gttaactatcaggagcgtacttacgctgctggtcgtatcccaggtagcttcttccgccgt
gaaggccgcccaagtgaaggtgaaacactgacttcacgtctgattgaccgtccgatccgt
ccactgttcccagacagcttcttgaacgaagtgcaggtgattgcgaccgttgtttctgtt
aacccacaagttaacccagacatcgtggcactgattggtgcctcagcggcgctgagcctg
tcaggtattccatttaacggcccaatcggtgctgctcgcgttggttacatcaacgatcag
tatgtgctgaacccaacgaccgacgagctgaaagaaagccgtttggatctggttgttgcc
ggtactgctgacgcagtattgatggtggaatcagaagcacagattctgtctgaagatcaa
atgttaggcgcggttatcttcggccacgaacaacaacaagttgtgattgagaatatcaac
gctctggttgctgaagttggtaaacctaagtgggattggcatgcagagccagttaacgaa
gcgctgcacgcgcgtgttgctgagctggcagaagctcgtctgggtgatgcttatcgcatc
actgagaaacaagagcgctatactcaggttgatgctattaaagctgacgtcactgaagcg
ctgttggcacaagatgaatctttagatgctagcgagattcaggacattctgggcgatgtt
gagaaaaacgtcgttcgtagccgtgtactgcgtggcgagccacgtatcgatggccgcgaa
aaagacatgatccgtggtctggatgtgcgtactggcgtattgccacgtacccatggttct
gcgttgttcacccgtggtgaaactcaggcgctggttaccgcaacactgggtactgcccgt
gatgcgcaaaatattgatgagctgatgggtgagcgtactgactcattcctgctacactat
aatttccctccatattgtgttggtgaaacaggtatggtgggttcacctaaacgtcgtgag
attggccatggccgtctggcgaaacgtggtgtactggcagtgatgccaagcccgagcgag
ttcccttacactgttcgtgtggtttctgaaatcaccgagtctaacggttcttcctcaatg
gcttctgtttgtggtgcatctttggccctgatggatgcaggtgtgccaattaaagccgct
gttgcgggtatcgcgatgggtctggttaaagaaggcgaaaactttgttgttctgtctgac
attctgggtgacgaagatcacttgggtgacatggactttaaagtggccggtagccgtgac
ggtattactgcactgcaaatggatattaaaattgaaggtatcacccgcgaaatcatgcaa
gtggcactgaaccaagccaagggtgcgcgtctgcacattctgggtgttatggaacaggct
atcagcacacctcgtggtgatatctctgagtttgctccacgtatctacaccatgaaaatc
aatcctgagaaaatcaaggatgtgatcggtaaaggtggttctgtgattcgtgcgctgact
gatgaaactggcaccaccattgaaatcgaagatgatggcaccattaagattgcagcaacc
gacggcgataaagcgaaacacgctatccgtcgtatcgaagaaatcactgctgaaatcgaa
gtgggccgtatctatgcgggtaaagttactcgtatcgttgatttcggtgcatttgtggca
atcggcggcggtaaagaaggtctggttcatatttctcaaatcgctgacaagcgtgtagag
aaagtgactgactatctgcaaatgggccaagaagtgccagttaaagtaatggaagttgat
cgccagggccgtatccgcctgagcatcaaagaagccactactcctgacgcagaagctccg
gcaccagaagcagcagagtaa
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