Yersinia intermedia: CH53_1312
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Entry
CH53_1312 CDS
T03608
Name
(GenBank) surface antigen variable number repeat family protein
KO
K07278
translocation and assembly module TamA
Organism
yin
Yersinia intermedia
Brite
KEGG Orthology (KO) [BR:
yin00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
yin02000
]
CH53_1312
Transporters [BR:
yin02000
]
Other transporters
Pores ion channels [TC:
1
]
CH53_1312
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Gene cluster
GFIT
Motif
Pfam:
Omp85
POTRA_TamA_1
POTRA
Motif
Other DBs
NCBI-ProteinID:
AJJ20860
UniProt:
A0A0T9M065
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Position
complement(1498851..1500587)
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AA seq
578 aa
AA seq
DB search
MPRYPILCFLCVLLATPVAYAANVRLQVEGLSGDLERNVRARLSTIGTDEVTSDGRFRSR
VDEAIRQGLRALGYYDPTITFDLQPRPAPARSVLIAKVVPGEPVLIAGVDIVLQGGAKTD
PDYLSLVRRDTPKIGSVLNHGDFDNFKSSLTGLALRRGYFDANMIKSQLGVAAELRKAFW
DIDFDSGERYRFGNVVFQGSQIREDFLQNLVPFHEGDFYTSDELAELNRRLAATNWFNSV
VVSPDFRDARKTKVLPLDAVVTPRTENTVELGGGYATDVGPRLTASWRKPWMNSYGHSLT
TSTTLSAPEQTLDFSYRIPLLKNPLEQYYLLQGGFKRTDLNDTKSDTTTLNVARFWDLSS
GWKRSVNLRWSLDHFTQGSVTDTTMLLYPGVNISRTRQRGGAMPVWGDSQNYSIDVSDTT
WGSDVDFAILQAQNVWIRTLGEKNRFVVRGNLGWIETNDFDRVPPSLRFFAGGDRSIRGY
KFRDISPRDSEGKLTGASKLATGTLEYQYNVTGRWWGAVFVDSGEAVNDIRKSDFKTGAG
VGVRWASPVGPIKLDIAKPIGDNEARGVQFYIGLGPEL
NT seq
1737 nt
NT seq
+upstream
nt +downstream
nt
gtgccacgataccctattttgtgttttttgtgcgtattgctcgccacgcctgtcgcttac
gctgccaatgtgcggttgcaggtcgaaggtcttagcggggatttagagagaaacgtcagg
gcgcgtttatcaacaattggtacggatgaagtgacgtccgatggccgcttccgctcaagg
gtggatgaagccatacgtcaggggttgcgcgcgttaggttattacgaccccaccatcacc
tttgatttgcagccgcgcccggcgccggcacgttccgttttaatcgccaaagtggttcct
ggtgaaccggttttgattgctggtgttgatattgtgctacaaggcggggcgaaaaccgat
cctgactatctgtcattggtacgccgcgatacccctaaaattggctcagtcctcaatcat
ggcgattttgataatttcaaaagttcactgacggggttagcgctgcgccgtggttatttt
gacgccaatatgatcaaaagtcagttgggtgttgccgctgagttgcgtaaagcattttgg
gatatcgattttgacagtggcgaacgctatcggtttggtaacgtggtcttccaaggctcg
caaatccgtgaagatttcctgcaaaatttagtgccttttcatgagggcgatttttatacc
tctgatgaactggccgagctgaaccgccgtttggcggcgactaactggtttaactcggtg
gtggtctcaccggattttcgcgatgcgagaaaaaccaaagtcctgccactggatgcggtc
gtcactccacgtaccgaaaatacggttgaattggggggcggttatgcgaccgatgttggc
ccacgtctgacggccagttggcgtaaaccgtggatgaactcctacgggcatagtctgacc
accagtaccacactttccgcgcccgaacagacgctggatttcagctatcgcattccgttg
ttaaaaaatccactggaacagtattacctgttgcaagggggctttaaacgcaccgatctg
aatgatacaaaatcggataccaccacgttgaacgttgcccgtttttgggatctgtccagt
ggttggaaacgctcagttaacctgcgttggagtttggatcactttactcaaggtagtgtc
accgacaccaccatgctgctgtatccgggggtgaatatcagccgtacccgtcagcgcggc
ggcgctatgccggtgtggggtgatagccagaattattctattgatgtctctgataccacc
tgggggtctgacgtagattttgccatactccaggcgcaaaacgtgtggattcgtaccttg
ggtgagaagaaccgttttgtggtgcggggtaatttgggctggattgaaaccaatgatttc
gatcgggtaccgccgtcactgcgcttcttcgccggtggagatcgcagtattcgtggctat
aagttccgtgatatttccccacgcgatagcgaaggcaaattaaccggtgcctctaaactg
gcgaccggtacgctcgaatatcaatataacgttaccggcagatggtggggcgcagtattt
gtcgattcgggtgaagcggttaatgatattcgcaagagtgacttcaaaaccggtgccggg
gttggggtccgctgggcttctccggtcggcccgatcaagctagacatcgccaaacctatt
ggtgacaacgaagcacgtggcgtgcaattttacatcggtttggggcctgaactatga
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