KEGG   Yersinia intermedia: CH53_1803
Entry
CH53_1803         CDS       T03608                                 
Symbol
polA
Name
(GenBank) DNA polymerase I
  KO
K02335  DNA polymerase I [EC:2.7.7.7]
Organism
yin  Yersinia intermedia
Pathway
yin03030  DNA replication
yin03410  Base excision repair
yin03420  Nucleotide excision repair
yin03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:yin00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CH53_1803 (polA)
   03410 Base excision repair
    CH53_1803 (polA)
   03420 Nucleotide excision repair
    CH53_1803 (polA)
   03440 Homologous recombination
    CH53_1803 (polA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:yin03032]
    CH53_1803 (polA)
   03400 DNA repair and recombination proteins [BR:yin03400]
    CH53_1803 (polA)
Enzymes [BR:yin01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     CH53_1803 (polA)
DNA replication proteins [BR:yin03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     CH53_1803 (polA)
DNA repair and recombination proteins [BR:yin03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA polymerase I
     CH53_1803 (polA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     CH53_1803 (polA)
SSDB
Motif
Pfam: DNA_pol_A 5_3_exonuc_N DNA_pol_A_exo1 5_3_exonuc HHH HHH_5
Other DBs
NCBI-ProteinID: AJJ20140
LinkDB
Position
2048389..2051187
AA seq 932 aa
MAQIAENPLILVDGSSYLYRAYHAFPPLTNGSGEPTGAMYGVLNMLRSLLLQYRPSHVAV
VFDAKGKTFRDELFAEYKSHRPPMPDDLRAQIEPLHQMVKAMGLPLLVVSGVEADDVIGT
LAQEAEKAGHAVLISTGDKDMAQLVTPNITLINTMNNAILGPQEVCEKYGVPPELIIDFL
ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDALFSNLDKISTLTFRGAKTMSAKLEQNK
DVAYLSYKLATIKTDVELDVTCDELKVSAPDDDQLHQLFSRYEFKRWLVDVEAGKWLDGK
KDRPTAQTSNRAFAVAEPVEAVEVTAVLSQENYQTILDEKSLAEWIERLKKAEVFAFDTE
TDGLDTLSSNLIGISFAVAPGEAAYLPLAHDYLDSPAQLDRDWVLATLKPLLEDDKALKV
GQNLKFDQSMLARYGIELRGIAFDTMLESYVLDSVAGRHDMDSLAERYLNHKTITFEEIA
GKGKNQLTFNQIALEQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKRVFQEIEMPLLPIL
SRIERTGVLIDQNILAAHSKELTIRLDELEKQAHELAEEPFNLASPKQLQAILYEKQKLP
ILKKTPGGAASTNEEVLAELALDYPLPKVILEYRGLAKLKSTYTDKLPLMINPVSGRVHT
SYHQAVTATGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPKGYRIMAADYSQIELRIMAHL
SQDKGLLAAFAAGKDIHRATAAEVFGTPLEKVTTEQRRSAKAINFGLIYGMSAFGLARQL
SIPRGEAQRYMDLYFERYPGVLEYMERTRKQAADQGYVTTLDGRRLYLPDIHSRNATRRK
AAEREAINAPMQGTAADIIKRAMIAVDAWLQQEPEPLVRVIMQVHDELVFEVHESVLESA
EQKIRELMEQSMQLAVPLKVDVGVGDNWDQAH
NT seq 2799 nt   +upstreamnt  +downstreamnt
atggcccagattgcagaaaacccattgatcctcgttgacggttcctcttacctctatcgt
gcttaccatgcgttcccaccactgaccaacggcagtggcgaaccaacgggtgcgatgtac
ggcgtgttgaacatgttgcgcagtctgttgctgcaatatcgtcctagccatgtcgcggta
gtattcgatgctaaaggtaaaacattccgtgatgagcttttcgctgaatataaatcccac
cgcccacccatgcctgatgatttgcgggctcaaattgagccattgcaccaaatggtgaaa
gctatggggctgcctttattggttgtttctggtgtggaggccgacgatgttattggtact
ttagcgcaagaagctgagaaagcaggtcacgccgtattaatcagtactggtgataaggat
atggcgcaattagttacgccaaatatcactttaatcaatacaatgaataacgctattttg
gggccgcaggaagtatgcgaaaaatacggcgttcctcctgaattgattattgattttctg
gctctaatgggggactcctcagacaatattccaggtgttcctggtgttggtgaaaagacc
gcacaagctttattacaaggtttgggtgggctggatgcgctgttcagtaatttggataaa
atatccacactgacattccgtggtgctaaaaccatgtccgccaagttagagcagaataaa
gatgttgcttacctctcctataaattagccaccataaaaacagacgttgaattagatgtg
acctgtgatgagctaaaagtttcggcccctgatgatgatcaattacatcagttattcagc
cgttatgaatttaagcgttggttggttgatgtagaagcaggcaaatggctagatggtaaa
aaagatcggccaacggcacaaacaagtaatagagcttttgcggtagcagagccagttgag
gcagttgaagtcaccgcagtattgtcacaagagaactatcagaccattttggatgagaaa
tctttagctgagtggattgagcgccttaaaaaagcagaagttttcgcttttgatactgaa
actgacggtctggatacgcttagcagcaatttaatcggtatatctttcgccgttgcaccg
ggtgaggccgcttatttgcccttggcgcatgattatctggattctcctgcccagctcgac
cgggattgggtattggccacgctaaaaccactactggaagacgataaagcccttaaagtt
ggccagaatctcaagtttgaccaaagcatgctggcacgttatggcattgagctgcgcggt
atcgctttcgataccatgctggaatcttacgttttagacagtgttgctggtcgccacgat
atggatagtctggcagagcgttatctcaaccataaaactattacttttgaagagattgcc
ggcaagggtaaaaaccaactgacctttaatcaaattgcgttggaacaagctgggccttat
gccgcagaagatgccgacgttacgctacagttgcatttggtgctgtggccaaaactgcaa
caaagtgaagggctaaagcgggtattccaggaaattgagatgccgttattaccgattctg
tcccgtatagagcgtacaggtgtcttgattgaccagaatatcttggccgcacattcaaaa
gagctgactatccgcctcgatgagttggaaaaacaggcccacgaattggctgaagaaccg
ttcaacctggcatcgcctaaacagcttcaggccattttgtatgaaaaacaaaaactgccc
attttgaagaaaacccctggtggtgctgcttcaactaatgaagaagtgttggctgagcta
gcgttagattaccctctgccgaaggtgatcctagagtatcgtggtctggctaagctaaaa
agtacttataccgacaagctgccgctgatgattaacccagtttcaggccgcgtccatacg
tcttatcatcaggcggtgacagcgacagggcgtttgtcctcacgtgatcctaacctacaa
aacattccagtgaggaatgaagaaggccgtcgtatacggcaggcttttattgcgcccaaa
ggttatcgcatcatggcggctgactactcacagattgagctgcgtattatggcgcacttg
tcgcaggataaagggctattagctgcgtttgctgctggaaaggatatccaccgtgcgaca
gcagcggaagtctttggtacgccactggaaaaggtcacaactgaacaacgccgcagtgcc
aaggcaattaactttgggcttatttatgggatgagtgcttttggtctggcgcggcagcta
agtattcctcgtggggaagcacagcgctatatggacctctattttgagcgctatcccggc
gtgttggaatacatggagcgcacacgtaagcaagcggccgatcaaggttatgttaccact
ctggatggtcgtcgcctctatttgccagatattcattcacgtaatgcaactcgccgtaag
gctgctgaacgtgaagcgatcaatgcgccaatgcaaggtaccgccgctgatattatcaaa
cgggcaatgattgccgtggatgcctggttacagcaggaaccagaaccattggtacgggta
atcatgcaggtacacgatgaattggtgtttgaagtgcatgaaagtgtattggaaagcgct
gaacaaaaaattcgtgaactgatggagcagagtatgcaactggcggtgccattgaaggtg
gatgtcggtgttggtgataactgggatcaggctcactag

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