Yersinia rochesterensis: CH54_365
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Entry
CH54_365 CDS
T03609
Symbol
hrpA
Name
(GenBank) RNA helicase HrpA
KO
K03578
ATP-dependent helicase HrpA [EC:
5.6.2.6
]
Organism
ykr
Yersinia rochesterensis
Brite
KEGG Orthology (KO) [BR:
ykr00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
CH54_365 (hrpA)
Enzymes [BR:
ykr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CH54_365 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
HA2_C
HA2_N
AAA_22
AAA_19
NACHT
nSTAND3
T2SSE
PhoH
ResIII
Ubiquitin_3
NTPase_1
AAA_16
Motif
Other DBs
NCBI-ProteinID:
AJJ36495
LinkDB
All DBs
Position
380409..384296
Genome browser
AA seq
1295 aa
AA seq
DB search
MKSSLAALSSQLGELMLRDQQRMRRRLQGAQKVHNPEAVEAITREIEAEFATAMQRVAGR
RAACPAITYPENLPVSQKKQDIYHAIRDHQVVIVAGETGSGKTTQIPKICLELGRGIKGV
IGHTQPRRLAARTVANRIADELDTSLGGSVGYKVRFNDQVGENTLVKLMTDGILLAEIQQ
DRLLMQYDTLIIDEAHERSLNIDFILGYLRELLPKRPDMKVIITSATIDPQRFSHHFNNA
PIIEVSGRTYPVEVRYRPIVDDADDVDRDQLQAIFDAVDELGRESPGDILIFMSGEREIR
DTADALMKQNLPHTEVLPLYARLSNSEQNRVFQSHHGRRIVLATNVAETSLTVPGIKYVI
DPGTARISRYSFRTKVQRLPIEPVSQASANQRKGRCGRVSDGICIRLYSEQDFLSRPEFT
DPEILRTNLASVILQMTSLGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAIQTASNGHQQ
LTPLGRQLAQLPVDPRLARMVLEAQKSGSVRELMIITSALSIQDPRERPMDKQQASDEKH
RRFADKDSDFLAFVNLWDYLKEQQKELSSAQFRKLCRSDFLNYLRVREWQDIYTQLRQVV
KELGIPVNSVAADYRSVHTAILTGLLSHIGQKDVEKQEYTGARNARFAIFPGSGLFKKPP
KWSMVAELVETSRLWGRIAARIEPEWIEPLAQHLVKHHYSDPHWEKAQGAVMASEKVTLF
GLPIVTERKINYGPIDPPLCRELFIRHGLVEGDWQTRHAFFRANLKLLAEVEELEHKSRR
RDILVDDETLFNFYDQRIGRDVVSARHFDSWWKKTSQTQPELLNFEKTMLIKDGANKVNP
LDYPNYWYQGSLKLRLSYQFEPGTDADGVTVHIPLPILNQVKEEGFDWQIPGIRRELVIA
LIKSLPKPVRRNFVPAPNYAEAFLARATPLETSLLEALERELRRMTGVTVSRESWQWEQV
PDHLKMTFRVLDDKNRTLREGKDLAALKLQLQEKVQETLSAVADDGIEQNGLHIWSFGSL
PVCYEQRRGGYEVKAYPALVDEKDSVAIRLFDTESQQQQAMWQGTRRLLLLNIPSPIKYL
HEKLPNKSKLGLYFNTYGKVMDLIDDCIACGVDKLVAQYGGPVWQQADFAQLQEKVRAEL
NETVVDIAKQVEQILTTAFSINKRLKGRVDISQALALSDIKAQLGGLIYRGFVTNNGWKR
LPDTLRYLHAIERRLEKLAVDPHRDRAQMLRIEHVQQMWQQWLNKLPPKRQQDEDVKEVR
WMIEELRVSLFAQQLGTAYPISDKRILQTIDQLSA
NT seq
3888 nt
NT seq
+upstream
nt +downstream
nt
gtgaaatcttcgctcgcagcattatcctcccaactcggggaattgatgctccgtgaccaa
cagcgcatgcgacgtcggctgcaaggcgcacaaaaagtccataatccagaggccgtagag
gcgattacccgtgaaatagaggccgaatttgctactgcaatgcagcgagttgctggccgt
cgggcggcctgtccggctatcacttatcctgaaaatttgccggtcagtcagaaaaaacaa
gatatttatcatgctatccgtgaccatcaggtggtgattgtcgccggtgaaacggggtcg
ggtaaaaccacacagataccgaaaatttgtctggagttggggcggggtataaaaggggtg
attggtcatacccagccgcgccgtctggccgcacgtaccgtggcgaaccgtattgccgat
gagctagacacctcccttggcggcagtgtcggttataaagtgcggtttaatgatcaagtg
ggcgaaaatacgctggttaagttaatgaccgacggtattttactggctgaaattcagcaa
gaccgcctgctgatgcaatatgacactctgattattgatgaggcccatgaacgtagcctg
aacattgatttcatcttgggttatttgcgcgagttattgccaaaacgtcctgatatgaaa
gtgattatcacctcggcgactattgatccgcagcgcttttctcatcatttcaataatgcg
cccattattgaagtctctggccgcacctatccggtggaagtgcgctaccggcccattgtg
gatgatgccgatgatgttgatcgcgatcagctacaagctatttttgatgccgtcgatgag
ttgggtcgcgaaagtcccggcgatattctgatctttatgagtggcgaacgggaaatccgt
gataccgctgatgcgctgatgaaacagaatctgccccatacggaagtgctgccgctgtat
gcccgcttatcaaatagcgaacagaatagggtgtttcagtctcatcatgggcggcgaatt
gtactggcaaccaacgtggcggaaacctcactgacggtgcccggtattaagtatgttatt
gaccccggcaccgcgcgtattagccgctacagtttccgcaccaaagtacagcggttgccc
atagagccggtgtcccaagcttctgctaatcagcgcaaaggtcgctgtggccgtgtatct
gacggtatttgtattcgtctttattccgaacaggatttcctgtctcgccctgaatttacc
gatccggaaattctgcgcaccaatttggcgtccgttatcctgcaaatgacctcactaggg
ctaggggatatcgcggctttcccgtttgtggaagcgccagataaacgtaatattcaagat
ggcgtgcggctgctggaagaattgggggcgatccaaactgccagtaacgggcatcaacaa
ttgacaccgctcggtcgccaattggcccaattaccggtcgatcctcgactggctcgaatg
gtgctggaagctcagaaaagcggcagtgtgcgcgaattgatgattattacctcggcgttg
tctatccaggatccgcgtgagcgcccgatggataaacagcaagcttccgatgaaaaacac
cggcgttttgctgataaagactctgatttccttgcgtttgttaatttgtgggattatctg
aaagagcagcaaaaagagctgtcatcggcacaattccgtaaattatgccgcagtgatttt
ctgaattatctgcgggtacgcgaatggcaggatatttatacccaactgcgccaggtagtg
aaagaattgggtatcccggtcaatagtgtcgctgcagattatcgcagcgtccatactgct
attctgaccggtttattgtcacatatcggccaaaaagacgttgaaaagcaagagtatacc
ggcgcacggaatgcccgctttgccattttccccggttccggtttattcaaaaaaccgcct
aaatggagcatggtcgctgagttagtcgagaccagccgcttatggggccgtattgctgcc
cgcattgagccagagtggattgaacccttagcgcagcatttggttaaacaccattatagc
gacccgcattgggagaaagcgcaaggggcggtgatggctagcgagaaagtgaccttattc
ggcttacctatcgtgactgagcgcaagataaattatggccccattgacccgccactgtgc
cgcgagctgtttatccgtcacggtttggtcgaaggagattggcaaacgcgccatgctttc
ttccgggctaatttaaagttgctggctgaagttgaagagctggagcacaaatctcgccgc
cgcgacattctggttgatgatgaaacactgtttaacttctatgaccagcgaattggacgc
gatgttgtttctgcgcgccattttgatagctggtggaagaaaaccagccagacacagccc
gagttactcaactttgaaaaaaccatgcttatcaaggatggggcgaacaaagttaacccg
ctggactacccgaattattggtatcaagggtcgctcaaattacggctttcttatcaattt
gagccgggtactgacgccgatggggtcactgtccatatcccgctcccgatcctgaatcag
gttaaagaagaggggtttgactggcaaattccagggattcgccgtgagctggtgatagcg
cttatcaagtcattacctaaacctgtgcgccgtaactttgttcctgcacctaattatgct
gaagcttttttggcccgagcaacaccgctggaaaccagtttactcgaggcattagagcgc
gagttgcgccgcatgacgggtgtgacagtgtcacgcgagagttggcaatgggagcaagtt
cccgaccatttgaaaatgaccttccgtgtgctggacgataaaaatcggactctacgtgaa
ggcaaagatcttgcggctttgaagctacaacttcaagaaaaggtgcaggaaaccctttct
gccgtggcggatgacggtattgaacaaaatggcttacatatctggagcttcggctcactt
cctgtgtgctatgaacaacgccgcgggggatacgaagtcaaagcctatcctgcactggtg
gatgagaaagacagtgttgcgatccgcttgtttgatacggaatctcagcaacagcaagca
atgtggcagggtacacggcggttattgctgctaaatattccctctcccattaagtattta
catgaaaaactgccgaataaatccaaactcggcctttatttcaatacttatggcaaagtg
atggatctgattgatgattgcattgcttgtggggtggataaactggtggcgcaatatggt
ggcccggtctggcaacaggctgattttgctcagttacaagaaaaagtgcgggctgagtta
aatgaaaccgtcgtggatattgccaagcaagttgagcagatcctaaccacggcgtttagt
attaataagcgtctaaaaggccgagtcgatatttcgcaagcattggcactttcagacatt
aaagcccagcttggtggtctgatttaccggggctttgttactaataatggctggaaacgc
ttacctgatacattgcgctatttacacgcgattgagcgccgtctggagaagttagctgtc
gaccctcatcgtgatcgcgcccaaatgttgcgcatagaacatgtccagcaaatgtggcag
caatggcttaataagttaccgcctaaacgccaacaagatgaagacgttaaagaagttcgt
tggatgattgaagaactgcgggtgagcttatttgctcagcaattggggacagcatatccc
atttcggacaaacgtattttgcaaactatcgaccaactctctgcttaa
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