Yersinia rochesterensis: CH54_729
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Entry
CH54_729 CDS
T03609
Symbol
uvrC
Name
(GenBank) excinuclease ABC subunit C
KO
K03703
excinuclease ABC subunit C
Organism
ykr
Yersinia rochesterensis
Pathway
ykr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ykr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CH54_729 (uvrC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ykr03400
]
CH54_729 (uvrC)
DNA repair and recombination proteins [BR:
ykr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CH54_729 (uvrC)
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Motif
Pfam:
UvrC_RNaseH_dom
GIY-YIG
UVR
HHH_5
HHH
HHH_2
Motif
Other DBs
NCBI-ProteinID:
AJJ37579
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Position
complement(787653..789518)
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AA seq
621 aa
AA seq
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MGCLTRRRYQIVTDCFDSKEFLKTVTSQPGVYRMYDKAGTVIYVGKAKDLKKRLTSYFRA
QVASRKTETLVKNIAQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPLIFLSA
DKHPRLAIHRGAKHEKGEYFGPFPNSYAVRETLALLQKLFPVRQCENSVYRNRSRPCLQY
QIGRCSGPCVTGLVTEEEYQRQVDYVRLFLSGKDQQVLTQLISRMEDASRLLHFEDAART
RDQIQAVRRVTEQQFVSGDSEDLDVIGVAFDAGLACVHVLFIRQGKVLGSRSYFPKVPAG
TELSEVVQTFVGQFYLQGSQGRTLPGEILLDFTLEEKDLLASSLSELAGRKIQIQSRPRG
DRARYLKLARTNASTALVTRLSQQSTIHQRMKELAKILNLDEINRMECFDISHTMGEQTV
ASCVVFDANGPVRSEYRRYNISGITPGDDYAAMSQVLKRRYGKALDDKKIPDVIFIDGGK
GQLSQAFDVFASLNVTWDKQKPLLVGVAKGSDRKAGLETLFLAAEGEGFSLPPDSPALHL
IQHIRDDSHNHAITGHRQRRSKVKNTSALEMIEGVGPKRRQILLKYMGGLQPLLNASVEE
IAKVPSISQALAEKIYNALKH
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atgggctgtttaacgcggagacgttatcaaatagtgactgattgttttgattctaaagag
tttttgaaaactgtcaccagccaacctggtgtttaccgcatgtatgataaggcgggaaca
gttatttatgtcggcaaagcgaaagatctcaagaagcgcctgaccagctatttccgtgct
caggttgcgagccgtaaaacggaaaccttagttaagaatattgcccagattgatgtaacc
gtcactcatacggagacggaagcgctcttacttgagcataattacatcaaactttatcag
ccccgttacaatgtgttgttgcgggatgataaatcgtatccacttattttcctcagtgca
gataagcatcctcgtctggcgattcatcgtggtgcaaagcatgagaaaggggaatatttt
gggccatttccaaattcctatgccgttcgcgaaactttagcattattacaaaagcttttt
cctgttagacaatgtgaaaacagtgtttatcgcaatcgctcgcggccttgtctgcaatac
caaattggccgttgttctgggccctgtgttaccggattagtgactgaagaagagtatcag
cgccaggtcgattatgtgcgtttgttcctctcaggcaaagaccaacaagtattgacgcaa
ttgatatcacggatggaagatgccagtcgattgcttcattttgaagatgcggcgcgtact
cgtgaccaaatacaagcggtacggcgcgttacggagcagcagtttgtttccggcgacagt
gaagatctcgatgtcatcggggtagcgtttgatgctggattagcttgtgtacatgtgttg
tttattcggcagggaaaggttctgggaagccgaagttatttccccaaggttcctgctgga
actgaattgagtgaagttgttcagacattcgtcgggcagttttacttacaaggaagccaa
gggcgtacgctcccaggtgaaattttgttagatttcacccttgaggaaaaggatctgttg
gcatcctctctttctgaactggcgggaagaaaaattcagatccaaagtcgtcctcgtggt
gatcgagctcgttacctcaagcttgctcggacgaatgcttcaacagcactggtgacacgg
ttatcgcagcaatcaactatccatcaacgaatgaaagagttggctaagattctcaatctt
gatgagataaatcggatggaatgttttgatatcagccatacgatgggagagcagacggta
gcatcttgtgtggtatttgacgcaaatggtcctgtacgttcggaatataggcgctacaat
attagtggtatcacgccgggtgatgattatgcggctatgtctcaagtgctgaaacgccga
tacggcaaagcattagatgataaaaagatccccgacgttatctttattgacggtggtaaa
ggtcagttatcccaagcttttgacgtttttgcttcactaaatgttacgtgggacaagcaa
aaaccgctattagttggggttgctaaaggaagtgaccgaaaagcagggctagaaacattg
tttctggcagctgaaggggagggcttttcattgccgccagactctcctgcattacattta
attcaacatattcgtgacgattctcacaatcatgcaataactgggcataggcagcgtcgt
tcaaaagtaaaaaatactagtgcattagaaatgatagagggagttggccctaaacggcgg
caaatactgctgaagtatatggggggactgcaacctttacttaatgctagcgtcgaggaa
attgcaaaagtgccgagtatttcacaagcattggcagaaaaaatctacaatgcattgaaa
cactga
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