Yersinia massiliensis: DA391_21820
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Entry
DA391_21820 CDS
T05402
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
yma
Yersinia massiliensis
Pathway
yma03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
yma00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DA391_21820
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
yma03019
]
DA391_21820
03400 DNA repair and recombination proteins [BR:
yma03400
]
DA391_21820
Enzymes [BR:
yma01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DA391_21820
Messenger RNA biogenesis [BR:
yma03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DA391_21820
DNA repair and recombination proteins [BR:
yma03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
DA391_21820
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Peptidase_S66
zf-CXXC
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
AVX40044
UniProt:
A0A0T9QXQ1
LinkDB
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Position
complement(4684853..4686685)
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AA seq
610 aa
AA seq
DB search
MSTAAVINRELLAVQVLRDTFGYQQFRPGQQEIINATLSGQDCLVVMPTGGGKSLCYQIP
ALVTDGLTLVVSPLISLMKDQVDQLLAYGVGAGCLNSSQTREQQLAVMDGCRTGQIKLLY
IAPERLVMESFLDQLHQWRPALLAVDEAHCISQWGHDFRPEYRALGQLKHRFPNLPVVAL
TATADEATRGDIVRLLNLDQPLIQVSSFDRPNIRYTLVEKFKPLDQLWRFVQDQRGKSGI
IYCNSRAKVEDTTARLQSRGLSVAAYHAGLDNERRAQVQEAFQRDDLQVVVATVAFGMGI
NKPNVRFVVHFDIPRTIESYYQETGRAGRDGLPAEAMLLYDPADMAWLRRCLEEKPAGAQ
QDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGKQQSCGNCDICLDPPKRYDGLADAQKAL
SCVYRVGQRFGLGYIVEVLRGANNQRIREFGHDKLSVYGLGREQSHEHWVSVLRQLVHLG
LLSQNIAQFSALQLTEAARPVLRAELPLQLAVPRIQSLKVRSSANQKSYGGNYDRKLFAK
LRKLRKSIADEGNIPPYVVFNDATLLEMAEQMPITASELLSVNGVGQRKLERFGAPFMAM
IRDHVDNNDD
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
gtgtcgaccgcagcagtgataaatcgggaattactggcagtgcaagtattgcgagatact
ttcggctatcagcagttccggcccggacaacaagaaattatcaacgccactttatcaggg
caagactgtctggtcgtgatgcccactggcggggggaaatccttgtgttatcagattccg
gcactggtgactgacgggctaacgctcgtcgtctcgcccctaatctctctgatgaaagac
caagttgaccaactgctcgcctacggtgttggcgcggggtgcttaaactcatctcaaacg
cgcgaacaacaattagccgtgatggatggctgccgcacgggtcaaatcaagctgctgtat
atcgcccctgaacggctagtgatggagagttttctcgatcaactgcatcaatggcgtcct
gctttgttggcggtagatgaggcgcattgcatctcccagtgggggcatgatttccgccct
gagtaccgcgcccttgggcaattgaagcaccgtttcccgaatttaccggtcgttgcactg
actgccacggctgatgaagcgacgcgtggcgatattgtgcgtttgctcaatctggaccag
ccacttattcaggtcagtagtttcgaccgccccaatatccgctataccttggtggagaag
tttaaaccgctcgatcagttatggcgttttgtccaagaccaacgtggcaaaagtggcatt
atttactgcaatagccgcgcaaaagtggaagacaccaccgcccgtttgcaaagccgcgga
ctcagcgttgcagcctaccacgcagggttggataacgaacggcgagcacaggtacaagaa
gcttttcagcgtgacgacttgcaggtcgtcgtggcgactgttgcgtttggcatggggatt
aataagcccaacgttcgttttgtggtgcattttgatatcccgcgcaccatcgagtcttat
taccaagaaacagggcgtgcggggcgtgatggcttacctgccgaggcaatgttgctgtat
gacccggcagacatggcatggttacgccgctgtctggaagaaaaaccggcaggcgcacag
caagatatcgaacggcataaattaaatgccatgggcgcatttgctgaagcacaaacctgc
cgccggttagtgttgctcaactattttggtgagggcaaacagcaatcctgtggtaactgc
gatatctgccttgatccgcctaagcgttacgatgggctggcggatgcacaaaaagcgctt
tcttgtgtgtatcgggtcggtcagcgttttggtctcgggtatatcgtcgaggtattgcgt
ggggcgaataatcagcgtatccgcgaattcggccatgacaaactgtcggtgtatggttta
ggtcgcgagcaaagccacgaacactgggtgagcgtcttacgccaactggttcatctgggg
ttattgagtcagaacattgcgcagttttctgccttacaactgaccgaggccgcgcgtccg
gttttgcgagctgaattgccgctacaattggctgtgccgcgcattcaaagcctgaaagta
cgcagcagtgccaatcagaaatcctatggtggcaattacgaccgtaaattgtttgccaaa
ttgcgtaagctgcgcaaatctattgctgatgaaggcaacattccgccttatgtcgtgttt
aatgatgccaccttgctggagatggcagagcagatgccgataacggccagcgaactgttg
agtgtcaatggcgtcggtcaacgtaaactggaacgctttggtgccccgtttatggcgatg
atccgcgaccatgtggacaacaacgatgattaa
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