Yersinia pestis Antiqua (biovar Antiqua): YPA_3961
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Entry
YPA_3961 CDS
T00369
Name
(GenBank) Excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
ypa
Yersinia pestis Antiqua (biovar Antiqua)
Pathway
ypa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ypa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
YPA_3961
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ypa03400
]
YPA_3961
DNA repair and recombination proteins [BR:
ypa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
YPA_3961
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
YPA_3961
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_inter
UvrA_DNA-bind
ABC_tran
SMC_N
AAA_16
AAA_29
AAA_22
nSTAND1
RsgA_GTPase
DnaJ_CXXCXGXG
AAA_25
nSTAND3
NACHT
AAA_23
T2SSE
Viral_helicase1
cobW
ScfRs
ExoX-like_C
Motif
Other DBs
NCBI-ProteinID:
ABG15922
UniProt:
A0A0E1NT26
LinkDB
All DBs
Position
4459221..4462064
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AA seq
947 aa
AA seq
DB search
MDNIEVRGARTHNLKNINLIIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAY
ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLFARVGEPRC
PDHDVPLAAQTVSQMVDNVISQPEGRRLMLLAPVVKDRKGEHTKILENLAAQGYIRARID
GEVCDLSDPPKLELQKKHTIEVVVDRFKVREDLAQRLAESFETALALSGGTAVVADMDDP
HVEELLFSANFACPICGYSMRELEPRLFSFNNPAGACPTCDGLGVQQFFDPDRVLQNPEL
SLAGGAIRGWDRRNFYYFQMLRSLAEHYKFDIEAPFNSLDSAVQQAVLYGSGKDTIEFKY
INDRGDTTVRRHPFEGVLHNMERRYKETESSAVREELAKFISNRSCASCSGTRLRREARY
VFVENTTLPEISELSIGHALSFFQNMKLSGQRAQIAEKILKEIGDRLKFLVNVGLNYLSL
SRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLETLIHLRNLGNT
VIVVEHDEDAIRAADHVIDIGPGAGVHGGEVVAEGTVDDIMAAPASLTGQFLSGKRSIAI
PEKRVSADPSKVLKLIGATGNNLKDVTLTLPVGLFSCITGVSGSGKSTLINDTLYSIAQR
QLNGATITEPAPYREIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGIFTPIRELFAGVPE
SRTRGYTPGRFSFNVKGGRCEACQGDGVIKVEMHFLPDIYVPCDHCKGKRYNRETLEVKY
KGKSIHEVLAMTIEEAREFFDAVPALARKLQTLIDVGLSYICLGQSATTLSGGEAQRVKL
SRELSKRGTGQTLYILDEPTTGLHFADIQQLLAVLHQLRDQGNTIVVIEHNLDVIKTADW
IVDLGPEGGSGGGEILVSGTPETVAECAASHTARFLKPMLQRKPQTV
NT seq
2844 nt
NT seq
+upstream
nt +downstream
nt
atggataatattgaagttcggggcgctcgcacccacaatcttaagaatatcaacctgatt
atcccgcgcgacaaactgattgttgtcaccggcctatcaggttcaggcaaatcctcactg
gcttttgataccttgtatgccgaaggtcaacgccgttatgttgagtctctctccgcctat
gcacgccaatttctgtcgctgatggaaaaaccggatgttgaccatattgaaggcctgtct
ccggctatctctatcgagcaaaaatcaacctcccataacccacggtcaactgtcggtact
atcactgaaatccatgattacctgcgcttgctgttcgctcgagtcggcgagccgcgctgc
cctgatcatgatgtcccattagcggcgcaaacagtcagccaaatggttgataacgtgata
agccagccggaaggccgccgtctgatgctgttggcaccggtggtaaaagatcgcaaaggt
gaacacactaaaatactggaaaatctggccgctcaaggttacatccgggcgcggatcgat
ggcgaggtttgtgatctgtctgatccgcccaaattagagctgcaaaagaaacacaccatt
gaagtggtggttgaccgtttcaaggtacgcgaagatctggcgcaacgtttggcagaatca
tttgaaaccgcattggcgttatccggcggtaccgccgtggtagccgatatggacgatccg
catgtggaggagttattattttccgctaactttgcctgcccgatttgcggttacagcatg
agagagttggaaccacgcctgttctcctttaacaacccggcgggtgcctgcccaacgtgt
gatggcttgggtgtccagcagttttttgatccagaccgcgtgctgcaaaaccctgagctc
tctttagctggcggagcgattcgcggctgggatcgccgtaacttctattacttccagatg
ctacgttcactggccgagcattataaatttgatatcgaagcgccgtttaactcactggac
agcgccgtccagcaagccgtgctatacggttcaggcaaagataccatcgagttcaagtac
attaatgatcgcggtgatactaccgttcgccgccacccttttgagggggtgttgcacaat
atggaacgccgttataaagagacggaatccagtgcggtgcgcgaagagttagccaaattt
atcagcaaccgctcctgtgcgtcatgcagcggtacccgtctgcgcagagaggctcgttat
gtcttcgtggaaaacaccaccctgccagagatttctgaactgagcatcggccatgcactg
agtttcttccagaatatgaagctcagtggtcagcgtgcacaaatcgctgaaaagatactg
aaagaaattggcgataggctgaaattcctggttaacgtcgggctgaattatctgtcttta
tcccgatctgccgaaaccctgtccggtggcgaagcacagcgtatccgtctggctagccag
attggcgcgggtttggtcggcgttatgtatgtgctggatgagccgtctatcggtttacat
cagcgcgataacgaacgcttgctggagacattgattcacctacgtaatctgggtaacacc
gtgattgtggtggaacatgatgaagatgccatccgggccgcagatcatgtgattgatatc
ggccctggggccggcgtgcacggaggtgaagttgtcgccgaaggaacggtagatgacatc
atggccgcaccggcgtcactcacgggccagttcctcagcggtaagcggagcatcgccatc
ccagagaaacgggtcagtgctgatccgagcaaagtcttaaagctgataggggctacgggc
aataacctgaaagatgtcactctgacgctgcctgtcgggctattcagttgcatcaccggg
gtctccggctcggggaaatcgacgctgatcaacgatactttatacagtattgcccaacgc
caactgaacggcgcgaccatcaccgaacccgcaccataccgcgagatccaagggctagaa
catttcgataaagtcatcgacattgatcaaagcccgattggccgtacgccgcgttctaac
ccagccacctataccggcatctttacccccattcgcgagttatttgccggagtgccggaa
tcacgcacccgcggttatacgccaggccgtttcagttttaacgtcaaaggtgggcgctgt
gaagcctgccagggcgatggggtaataaaagtagaaatgcactttctgcctgatatttat
gttccttgcgatcactgtaaaggtaagcgttataaccgtgaaacgctggaagtaaaatat
aaaggtaaaagtattcacgaagttctggcgatgactattgaagaggcccgcgagttcttt
gatgccgtacctgctctggcacgtaagctgcaaaccctgatagatgttggcctgtcctat
atttgtctgggccaatcagccacaacgttatctggtggggaagcacagcgagtgaaacta
tcgcgcgaactgtcaaaacgcgggaccggccagacattgtatattctggatgagcctact
accggcctgcattttgccgatattcagcaactgctagcggtattgcatcagttacgggat
cagggcaataccattgtagtgattgaacacaatctggacgtaattaagacggcggattgg
attgtcgatctggggccagaaggcggcagtggtggcggtgaaattttggtctccggcaca
ccagagacggtggcggaatgcgcggcatcacacacggcacggttccttaagccaatgttg
cagcgtaagccacaaaccgtttaa
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integrated database retrieval system