Yersinia pestis Nepal516 (biovar Antiqua): YPN_3952
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Entry
YPN_3952 CDS
T00370
Name
(GenBank) DNA gyrase subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
ypn
Yersinia pestis Nepal516 (biovar Antiqua)
Brite
KEGG Orthology (KO) [BR:
ypn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ypn03032
]
YPN_3952
03400 DNA repair and recombination proteins [BR:
ypn03400
]
YPN_3952
Enzymes [BR:
ypn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
YPN_3952
DNA replication proteins [BR:
ypn03032
]
Prokaryotic type
DNA Topoisomerases
YPN_3952
DNA repair and recombination proteins [BR:
ypn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
YPN_3952
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
GyrB_insert
DNA_gyraseB_C
Toprim
HATPase_c
GyrB_hook
HATPase_c_3
Toprim_4
DUF6865
Motif
Other DBs
NCBI-ProteinID:
ABG20279
UniProt:
A0A0H2YNJ1
LinkDB
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Position
complement(4494406..4496820)
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AA seq
804 aa
AA seq
DB search
MSNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIL
VTIHADNSVSVQDDGRGIPTGMHDEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV
SVVNALSEKLELVIRREGKVHEQTYKMGVPQAPLKVVGETEQTGTTVRFWPSFQTFTNNT
EFQYEILAKRLRELSFLNSGVSIKLKDKRNDKEDHFHYEGGIKAFVEYLNKNKNPIHPKV
FYFSTMKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKE
GYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLVEY
LLENPTDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALSEL
YLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGR
DEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVFIAQPPLYKVKKG
KQEQYIKDDDAMEQYQMTLALDGAALHTNAHAPALAGEPLEKLVAEHYSVQKTIARMERR
YPRALLNNLIYQPTLQEEDLGNKEVVTQWIDSLVVLLNEKEHHGSSYSSVVRENRERQLF
EPILRIRTHGVDTDYDLDFDFIHGGEYRKICLLGDKLRGLIEDGAFVERGERRVPVSSFE
EALDWLVKESRRGLAIQRYKGLGEMNPDQLWETTMDPESRRMLRVMVKDAIAADQLFTTL
MGDAVEPRRAFIEENALRAANIDI
NT seq
2415 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaatacttatgactcctcaagtatcaaggtattaaaagggctggatgccgtgcgt
aagcgtccgggcatgtatatcggagatactgatgatggtaccggtctgcaccacatggta
ttcgaggttgtggacaacgctattgacgaagccctcgcgggtcattgtaaagaaattctg
gtaaccatccacgcggataactccgtttctgtacaggatgatggccgtggtatcccaacc
ggtatgcacgatgaggaaggggtatctgcagcagaggtcatcatgaccgtgttgcatgct
ggcggtaaatttgacgataactcctataaagtttccggcggtttgcatggcgtaggggta
tccgttgttaacgccctgtctgaaaagttggaactggttattcgccgtgaaggtaaagtt
cacgagcaaacctacaaaatgggcgtgccacaggcaccgctgaaagtggtgggtgaaact
gagcaaaccgggactactgtgcgtttctggccaagtttccagacctttaccaataacacc
gaattccagtatgagatcctggctaaacgcctgcgcgaactctctttcctgaactcgggt
gtttcaatcaaactgaaagacaaacgtaacgataaagaagaccacttccattacgaaggt
ggtatcaaggcgtttgttgaatatctgaacaaaaacaagaacccgatccacccgaaagtg
ttctacttctccaccatgaaagacgatatcggggtggaagtggcgctacagtggaacgat
ggtttccaggaaaatatttactgcttcaccaataacattccacagcgtgatggtggtacc
catttagttggtttccgtacggcgatgacccgtaccctgaacagctatatggataaagaa
ggctacagcaaaaaagcgaagatcagcgccaccggtgatgacgcccgtgaaggcttgatt
gctgttgtctcagtgaaagtgcccgatcctaaattctcctcacagaccaaagataaattg
gtttcttctgaggtgaaaacggcggtcgaaacgctgatgaacgagaagttggttgagtat
ttgttggaaaacccaactgacgccaaaatcgttgtgggtaaaatcattgatgcggcccgc
gcccgtgaagctgcgcgtaaagcccgtgaaatgacacgccgtaaaggtgcgctcgatctg
gcgggtttacccggcaaactggcagactgtcaggaacgtgacccggcattgtccgaactc
tacttagtggaaggggactctgcgggcggctcggctaaacaaggccgtaaccgtaaaaat
caggccattttgccgctgaaaggtaaaatcctgaacgttgagaaagcgcgttttgacaaa
atgctctcttcacaggaagtggcgacactgatcaccgcgttaggttgtggtattggccgg
gatgaatataacccggataaattgcgttatcacaatatcattatcatgaccgatgccgac
gtggatggctcgcacatccgtacgttgttgttgaccttcttctaccgtcagatgccggaa
attattgagcgtggtcatgtgtttatcgctcagcctccgctgtataaagtgaagaaaggt
aagcaagagcagtacatcaaagatgatgatgcgatggagcagtaccaaatgacactggct
ctggatggcgcggcattgcataccaatgctcacgcaccagcactggctggtgagcctttg
gagaaactggttgctgagcattacagtgtccagaagactatcgcccgcatggaacgccgt
tatccgcgtgctttgctgaataacctgatttatcagcctaccttgcaagaagaggatttg
ggcaataaagaggttgtgacgcaatggattgattcgctggtggtcttgctgaacgaaaaa
gaacaccatggcagcagctacagttcagtggtgcgtgagaaccgtgagcgtcaactgttc
gagcctattttgcgtattcgtacccacggggttgataccgattatgatctggacttcgat
ttcatccatggtggcgagtaccgtaaaatctgtctattgggtgacaaactgcgtggctta
atcgaagacggtgctttcgttgaacgtggcgagcgtcgtgtgccggtttcaagcttcgaa
gaggcgctggactggttagtgaaagagtctcgccgtggtttggcaatccagcgttacaaa
ggcttgggtgaaatgaaccccgatcagttgtgggaaaccacgatggatccagagagccgt
cgtatgctgcgagtcatggtgaaagatgccatcgccgccgatcaactcttcactactctg
atgggtgatgctgttgaacctcgtcgtgcctttatcgaagagaatgcactgcgcgcagcc
aatattgatatctaa
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