Yersinia ruckeri Big Creek 74 (serotype O2): UGYR_08115
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Entry
UGYR_08115 CDS
T03887
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
yrb
Yersinia ruckeri Big Creek 74 (serotype O2)
Pathway
yrb02020
Two-component system
yrb02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
yrb00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
UGYR_08115
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
UGYR_08115
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
yrb03021
]
UGYR_08115
Transcription machinery [BR:
yrb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
UGYR_08115
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_38
Motif
Other DBs
NCBI-ProteinID:
AKA38364
UniProt:
A0A085UAS0
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All DBs
Position
1766134..1767567
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AA seq
477 aa
AA seq
DB search
MKQGLQLRFSQQLAMTPQLQQAIRLLQLSTLELQQEIQLALESNPLLEQTDIHEEVDAKE
IEDRDELDTREALEQKDMPEELPLDATWDEIYTAGTPSGMGNDYSDDELPVYQGETTQTL
QDYLMWQVELTPFSETDSAIATSIVDAVDNTGYLTVPLEDILESMGDDNLTLDEVEAVLK
RIQHFDPIGVAARNLRECLLVQLSQYAKETPYLAEAKLIVSDYLDLLGHHDFRTMIRLSR
LKEDTLKEAITLIQSLDPRPGQSINTGESEYVIPDVLVRKEHSGWVVELNADSIPRLKIN
QQYAAMGGSARNDSDGQFIRSHLQEAKWLIKSLESRNETLLKVARCIVEQQTAFFENGEE
YMKPMVLADIAQAVDMHESTISRVTTQKFLHSPRGIFELKYFFSSHVNTESGGEASSTAI
RALVKKLVAAENPAKPLSDSKLTTLLCEQGIMVARRTVAKYRESLSIPPSNQRKQLV
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgaagcaaggtttgcaactcaggtttagccaacaactggcaatgaccccccaactccaa
caagccatccgtttgttgcagctctctacgcttgaacttcagcaagagattcagttggcg
ctggaaagcaacccactgcttgagcaaacggatattcacgaagaagtcgatgccaaagag
attgaagatcgggacgaactggatacccgagaagctcttgaacaaaaagatatgcccgaa
gagctgccattggatgccacttgggatgaaatttacactgctggcacgccgtcaggaatg
ggcaacgattatagcgacgatgaactgccggtttatcagggcgaaaccacgcaaaccctg
caagactatttgatgtggcaggtagagttaacgccgttctctgaaaccgatagcgctatc
gccacctcaatcgttgatgctgtagataacactggttatctcaccgtgccactggaagat
attctggaaagcatgggcgatgacaacctgacgcttgacgaagtggaggcggtactcaag
cgcatccagcattttgatcctattggcgttgcggcgcgtaatctgcgggaatgcctgctg
gttcagttgtcgcagtatgcgaaagaaacaccttatttggctgaagccaagctgattgtg
agcgattatctggatctgttaggtcaccatgatttccgcacaatgatccgcttgagtcgt
ttaaaagaagatacacttaaagaagccattacactgattcaatcattggatccacgccca
ggccaatcgatcaataccggtgagtctgagtatgtcattcctgacgttctggtacgtaaa
gagcatagtggctgggtagtagaactgaacgctgatagcattccacggctgaaaatcaat
cagcagtatgcggcaatgggcggcagtgcgcgcaatgacagcgatggtcagtttatccgt
agtcatttgcaggaggcgaagtggctgatcaagagcctggaaagccgcaacgagacgcta
ttgaaagttgcccgttgcattgtcgagcaacagaccgcgttctttgaaaacggtgaagaa
tatatgaaacccatggtgctggctgatatcgctcaggccgtggatatgcatgaatcgacg
atttctcgtgtgacgacgcaaaagttcttgcatagtcctcggggcattttcgagctaaag
tattttttctctagccatgtaaataccgaaagcggaggcgaagcctcttccacggcaatc
cgggcattagtgaaaaaattagtggcggcagagaatcctgccaaaccacttagcgacagt
aagctgaccaccctactttgcgaacaaggtattatggtggcacggcgaaccgtcgcgaaa
taccgagagtcgttatccatcccgccgtctaaccaacgtaaacagttggtttga
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