Yersinia ruckeri Big Creek 74 (serotype O2): UGYR_13565
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Entry
UGYR_13565 CDS
T03887
Symbol
truD
Name
(GenBank) tRNA pseudouridine synthase D
KO
K06176
tRNA pseudouridine13 synthase [EC:
5.4.99.27
]
Organism
yrb
Yersinia ruckeri Big Creek 74 (serotype O2)
Brite
KEGG Orthology (KO) [BR:
yrb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
yrb03016
]
UGYR_13565 (truD)
Enzymes [BR:
yrb01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.27 tRNA pseudouridine13 synthase
UGYR_13565 (truD)
Transfer RNA biogenesis [BR:
yrb03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
UGYR_13565 (truD)
Prokaryotic type
UGYR_13565 (truD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruD
Motif
Other DBs
NCBI-ProteinID:
AKA39321
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All DBs
Position
3019511..3020560
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AA seq
349 aa
AA seq
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MDMENLTWLHGQPEASGVLKANPEDFVVVEDLGFEPDGEGEHLLVRIRKNGCNTQFVADY
LSRFAKIHPRLVSYAGLKDRHAVTEQWFCLHLPGKETPDMAAFELEGCEVLETVRQKRKL
RIGSLKGNAFTLVLRHISNRQDVESRLNLIAAQGVPNYFGSQRFGRGGNNLVQVRRWANN
EIQVKERSKRSFYLSASRSAMFNLIASARLAEQRATQVLEGDALQLSGRGSWFVAQAEEL
ATLQQRLDAGELKVTAPLPGDGDLGTQGEALAFEQHCLTEQTELLSLMQRERVEGARRAI
LLQPQNMSWDWWDNVTLELHFWLPAGSFATSVVREIMRLDNGDAADLTE
NT seq
1050 nt
NT seq
+upstream
nt +downstream
nt
atggatatggaaaatctgacatggctgcacggccagcccgaggctagcggcgtgttgaaa
gcgaaccctgaagatttcgtcgtcgtcgaagatctgggctttgagccagatggtgagggc
gaacatcttttagtgcgtatccgtaagaatggttgtaatacgcaattcgttgctgattac
ctatcgcgatttgccaaaattcatcctcggttggtgagttacgctggcttgaaagaccgc
cacgcggttacggaacaatggttctgtctgcatttgccaggtaaagaaacgccggatatg
gcagccttcgaactggaaggttgcgaggtgctggaaaccgtaaggcagaaacgtaaattg
cgtattggctcgctgaaaggtaatgcttttacgctggttttacgtcatatcagcaatcgt
caggatgtggagtcgcgcctgaatttaattgccgctcaaggcgttcccaactactttggt
agccaacgctttggtcgtggtggcaataatctggtgcaagtgcgccgctgggccaacaat
gaaattcaagtaaaagagcgcagcaagcgcagtttctatctgtcggccagccgcagcgcc
atgtttaacctgattgccagcgcccgtttagctgagcagcgcgcaacccaagtgctggaa
ggtgacgctttgcagcttagcggtcgtggtagctggtttgtcgctcaagcggaagagttg
gcaacgttacaacaacgtctggatgccggagagttgaaggttacggcaccgctgccgggt
gacggcgatttaggcactcaaggtgaggcgttggcttttgaacaacactgcctgaccgag
caaactgagctgttatcactgatgcagcgtgaacgcgttgaaggtgcgcgccgagccata
ttgctacagccacagaatatgagttgggactggtgggataatgtcacccttgagttgcac
ttctggttgcctgcgggcagttttgcaactagcgtagtcagagaaatcatgagattggat
aacggcgatgctgcggatcttactgagtaa
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