Yersinia ruckeri Big Creek 74 (serotype O2): UGYR_15800
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Entry
UGYR_15800 CDS
T03887
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
yrb
Yersinia ruckeri Big Creek 74 (serotype O2)
Pathway
yrb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
yrb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
UGYR_15800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
yrb03019
]
UGYR_15800
Enzymes [BR:
yrb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
UGYR_15800
Messenger RNA biogenesis [BR:
yrb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
UGYR_15800
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UTP25
UvrD-helicase
P-loop_SecA
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AKA39699
LinkDB
All DBs
Position
3505137..3506498
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AA seq
453 aa
AA seq
DB search
MSFDSLGLNADILRAIEEQGYLVPTPIQRQAIPVVLQGRDLMASAQTGTGKTAGFTLPLL
QILNENAQPIKGRRPVRALILTPTRELAAQIGENVEQYSKYLKLRSLVVFGGVSINPQMM
KLRGGVDILVATPGRLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKLPAK
RQNLLFSATFSDEIKGLASKLLNNPASVEVARRNTASEQITQSVHFVDKNRKRELLSQMI
GSQNWQQVLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDGKIRVLV
ATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCIDEHKLLRDI
ERLLKREIPRFAIEGYEPDPSIKADPIQNGRQGRGASRPGMGRGSATRSSGSAGTGAGRG
DSRGNSSKPRSQGDGQRRSAPPSSRPRSRKPGE
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttgattccctcggcttaaacgccgatatcctgcgtgcaattgaagagcagggc
taccttgtgccgacgccaattcagcgtcaggcgatccctgtagtactgcaaggccgtgat
ttaatggccagtgctcaaaccggtactggtaaaaccgcaggttttaccttgccgctgttg
caaatactcaacgaaaacgcacaaccaatcaaaggccgtcgccctgtacgtgccctgatt
ttgacgccaacgcgtgaactggcggcacaaatcggcgaaaacgtcgaacagtacagcaag
tatcttaaattacgttcgctggtggtcttcggtggtgtgagtatcaatccgcagatgatg
aagttgcgcggaggtgtcgatattttggtcgcgactccgggccgtttactggatctggaa
catcagaacgcggtagatttatccaaaattgaaattctggtgctggatgaagccgatcgc
atgttggatatgggctttattcatgatattcgtcgagtgttggccaaattgcctgccaaa
cgccagaatctgttgttctctgcgactttctcagatgaaatcaaaggattggctagtaag
ctgctgaataatccagcatcagtcgaagttgcacgccgcaacaccgcttctgagcaaatt
acccaaagtgttcacttcgtggataaaaaccgcaaacgtgaattactgtcccagatgatt
ggcagccagaattggcagcaggtattggtatttactcggactaagcacggcgctaaccat
ctggcagaacaattgaataaagacggtatcactgccgccgctattcacggtaacaaaagc
caaggtgctcgtactcgtgcgttggctgattttaaagacggcaaaatccgcgtgctggta
gccacagatattgctgctcgtgggctggatatcgatcagttgccacatgtggtcaactat
gaattgcctaacgtgccggaagattacgttcaccgtatcggtcgtactggccgtgcagaa
cgcactggcgaagcgatttctctggtttgtatcgatgagcacaaattactgcgtgatatc
gaacgcttgttgaaacgtgaaattccgcgtttcgctatcgaaggctatgagccagatcca
agcatcaaagcggatccgatccaaaacgggcgtcaaggccgtggcgcatctcgtccaggt
atggggcgtggcagcgcaacccgttcatcaggcagtgcaggtaccggtgctggtcgtggt
gatagccgtggcaatagcagcaaacctcgtagccagggtgatggccagcgccgttcagcg
ccaccgtcatctcgcccacgtagccgtaaaccgggcgaataa
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