Yokenella regensburgei: HEC60_19075
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Entry
HEC60_19075 CDS
T06519
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
yre
Yokenella regensburgei
Pathway
yre03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
yre00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HEC60_19075 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
yre03021
]
HEC60_19075 (rpoC)
03400 DNA repair and recombination proteins [BR:
yre03400
]
HEC60_19075 (rpoC)
Enzymes [BR:
yre01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HEC60_19075 (rpoC)
Transcription machinery [BR:
yre03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HEC60_19075 (rpoC)
DNA repair and recombination proteins [BR:
yre03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HEC60_19075 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
LPD39
Motif
Other DBs
NCBI-ProteinID:
QIU91260
UniProt:
A0A6H0KDZ7
LinkDB
All DBs
Position
3953723..3957946
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERNQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKSMDLEQECETLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERIYRAG
LASLHARVKVRITEYEKDENGEFVAKTSLKDTTVGRSILWMIVPKGLPFSIVNQALGKKA
ISKMLNTCYRILGLKPTVIFADQTMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINREGKEEQQVSFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTLEGITMTPVIEGGDVKEPLRDRVL
GRVTAEDVLKPGTADILVPRNTLLHEHWCDLLEANSVDSVKVRSVVSCDTDFGVCAHCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIRL
SNAKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGSVMAKGDGEQVAGGETVANW
DPHTMPVITEVSGFIRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKI
VDANGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARVPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVITPLDGSDPYEEMIPKWRQLNVFE
GERVERGDVVSDGPEAPHDILRLRGVHAVTRYITNEVQDVYRLQGVKINDKHIEVIVRQM
LRKATIESAGSSDFLEGEQVEYSRVKIANRDLEANGKVAATFARDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGELPA
APQVTAEDASASLAELLNAGLGGSDND
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttctgaaagcgcaaactaaaaccgaagagtttgatgcgatc
aaaattgctctggcttcgccagacatgatccgttcatggtctttcggtgaagttaaaaag
ccggaaaccattaactaccgtacgttcaaaccagagcgtgacggtctgttctgtgctcgt
atcttcgggccagtaaaagactacgagtgcctgtgcggtaagtacaagcgcctgaaacac
cgtggcgtgatctgtgagaagtgcggcgttgaagtgacccagactaaagtgcgtcgtgag
cgcatgggccacattgagcttgcctctccgactgcgcacatctggttcctgaaatcgctg
ccgtcccgtatcggtctgctgctcgatatgccgctgcgtgatatcgaacgcgtactgtac
ttcgaatcctatgtggttatcgaaggcggtatgaccaacctggaacgcaaccagatcctg
actgaagagcagtatctggacgcgctggaagagttcggtgacgaattcgatgcgaagatg
ggtgcggaagctatccaggccctgctgaagagcatggatctggagcaagagtgtgaaact
ctgcgcgaagagctgaacgaaaccaactccgaaaccaagcgtaaaaagctgaccaagcgc
atcaagctgctggaagcgttcgtacagtctggcaacaagccggagtggatgatcctgacc
gttctgccggttctgccgccagatctgcgtccgctggttccgctggatggtggtcgtttc
gcaacgtcagatctgaacgatctgtatcgtcgcgttatcaaccgtaacaaccgtctgaag
cgtctgctggatctggctgcgccagatatcatcgtacgcaacgaaaaacgtatgctgcag
gaagcggtagatgccctgctggataacggtcgtcgcggtcgtgcgatcaccggttctaac
aagcgtccgctgaaatctttggccgatatgatcaaaggtaagcagggtcgtttccgtcag
aacctgctcggtaagcgtgttgactactccggtcgttctgtaatcaccgtaggtccatac
ctgcgtctgcatcagtgcggtctgccgaagaaaatggcactggaactgttcaaaccgttc
atctacggcaagctggaactgcgtggcctcgccaccaccatcaaagccgctaagaaaatg
gttgagcgcgaagaagctgtcgtttgggatatcctggacgaagttatccgcgaacacccg
gtactgctgaaccgtgcaccaaccctgcaccgtttgggtatccaggcgtttgaaccggtt
ctgatcgaaggtaaagcaatccagctgcacccgctggtttgtgcggcatataacgccgac
ttcgatggtgaccagatggctgttcacgtaccgctgacgctggaagcccagctcgaagcg
cgtgcgctgatgatgtctaccaacaacatcctgtccccggcgaacggcgaaccaatcatc
gttccgtctcaggacgttgtactgggtctgtactacatgacccgtgactgtgttaacgcc
aaaggcgaaggcatggtgctgactggcccgaaagaagctgagcgtatttatcgcgctggc
ctggcctctctgcatgcgcgtgttaaagtgcgtatcaccgaatatgaaaaagatgaaaac
ggcgaattcgttgcgaaaaccagcctgaaagacacgaccgtaggtcgttctattctgtgg
atgatcgtaccgaaaggtctgcctttctccatcgtcaaccaggcgctgggcaagaaagct
atctccaaaatgctgaacacctgttaccgcattctgggcctgaagccgaccgtaatcttc
gctgaccagaccatgtacaccggctttgcttatgcagcgcgttcaggtgcatctgttggt
atcgatgacatggttatcccagagaagaaacacgagatcatctctgaagctgaagccgaa
gttgccgagatccaggagcagttccagtctggtctggtcaccgcgggcgaacgttacaac
aaagttatcgatatctgggcagcggcgaacgatcgtgtatccaaggcgatgatggacaac
ctgcagaccgaaacggttatcaaccgtgaaggtaaagaagagcagcaggtttccttcaac
agcatctacatgatggccgactccggtgcgcgtggttctgcagcacagattcgtcagctg
gctggtatgcgtggcctgatggctaagccggatggttccatcatcgaaacgccaatcacc
gcgaacttccgtgaaggcctgaacgtactccagtacttcatctcaacccacggtgctcgt
aaaggtctggcggataccgcactgaaaacagcgaactccggttatctgactcgtcgtctg
gtagacgtcgcgcaggatctggttgttactgaagacgattgtggcacgctggaaggcatc
accatgaccccggttatcgagggtggtgacgttaaagagccgctgcgcgatcgcgttctg
ggtcgtgtgaccgctgaagacgttctgaagccgggtaccgcagatattctggttccgcgt
aacacactgctgcacgagcactggtgtgatctgctggaagcgaactctgttgactccgtg
aaagtacgttccgtcgtatcctgtgacaccgactttggtgtatgtgcgcactgctatggt
cgtgacctggcgcgtggccacatcatcaacaaaggtgaagctatcggcgttatcgcggca
cagtccatcggtgagccgggtacacagctgacgatgcgtacgttccatatcggtggtgcg
gcatctcgtgcggctgctgaatccagcatccaggtgaaaaacaaaggtagcatccgtctg
agcaacgcgaagtcggttgtgaactccagcggtaagctggttattacttcccgtaatacc
gagctgaaactgatcgacgaattcggtcgtaccaaagaaagctataaagtgccttacggc
tctgttatggcgaagggtgatggcgaacaggttgctggcggcgaaaccgtagcaaactgg
gatccgcataccatgccagttatcaccgaagtgagtggtttcatccgcttcactgacatg
atcgacggccagaccattactcgtcagaccgacgagctgaccggtctgtcctcgctggtc
gttctggattctgcagaacgtaccgctggtggtaaagatctgcgtccggcactgaaaatc
gttgatgcgaacggtaacgacgttctgatcccgggcaccgacatgccggctcagtacttc
ctgccgggtaaagcgattgttcagctggaagatggcgtacagatcagctctggtgacacc
ctggcccgtgttccgcaggaatccggcggtaccaaggacatcaccggtggtctgccgcgc
gttgccgacctgttcgaagcacgtcgtccgaaagagccggcaatcctggctgaaatcagc
ggtatcatttccttcggtaaagaaaccaaagggaagcgtcgtctggttatcaccccgtta
gacggtagcgatccgtacgaagagatgattccgaaatggcgtcagctcaacgtgtttgaa
ggcgagcgtgtagaacgtggtgacgtggtttccgacggtccggaagcaccgcacgacatt
ctgcgtctgcgtggcgttcatgcggtaacccgctatatcaccaacgaagtgcaggacgtt
taccgtctgcagggcgttaagattaacgataagcacatcgaagttatcgttcgtcagatg
ctgcgtaaagcaaccatcgaaagcgccggaagctctgacttcctcgaaggtgagcaggtt
gaatactctcgcgtgaagattgctaaccgcgatctggaagcgaatggcaaagtggctgcg
accttcgcacgcgacctgctgggtattaccaaagcgtctctggcaaccgagtccttcatt
tctgcggcatcgttccaggaaacgactcgtgttctgaccgaagcagctgttgcgggtaaa
cgtgacgaactgcgcggcctgaaagagaacgttatcgtgggtcgtctgatcccggcgggt
accggttatgcgtaccaccaggatcgtatgcgccgccgtgctgcgggtgaactcccggct
gcaccgcaggtaactgctgaagatgcgtctgccagcctggcagaactgctgaacgcaggc
ctgggcggttctgataacgattaa
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