Yersinia rohdei: CH64_1014
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Entry
CH64_1014 CDS
T03610
Name
(GenBank) L,D-transpeptidase catalytic domain protein
KO
K21470
L,D-transpeptidase YcbB
Organism
yro
Yersinia rohdei
Brite
KEGG Orthology (KO) [BR:
yro00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
yro01002
]
CH64_1014
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
yro01011
]
CH64_1014
Peptidases and inhibitors [BR:
yro01002
]
Cysteine peptidases
Family C82
CH64_1014
Peptidoglycan biosynthesis and degradation proteins [BR:
yro01011
]
Peptidoglycan biosynthesis and degradation
Transpeptidase
CH64_1014
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YkuD
Scaffold
PG_binding_1
Motif
Other DBs
NCBI-ProteinID:
AJJ12466
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Position
complement(1108102..1109970)
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AA seq
622 aa
AA seq
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MSVERRNPQRALALYCALICGLTPIFTVSATAPVMPVASSSAMSSPAKSMTVAQSRSQLL
AALPKNVTPLYSAELALLYAANQMQPMWQDRAAVQHFQQQLAEVALSGIQPQFMQWVKWL
SDPEIKGLARDVVLSDAMLGYLHFISGVGANGSVWLYSNVPYKMAMPPATILNRWQQAVH
EGTTAPYLASLAPQHPQYEKMHQALKHMLADRRPWPLMANGPSLRPGQLSDDIPALREIL
DRTGMLHPVDGAPVKTAETIPEDNPTIAAVNDDLSVDEEKSRSQAHSLVVSPSAAPVADE
PIAGEAIAPAAPTSTATVTDNVYTPELVEAVKRFQLWHGLSDDGIIGARTREWLNVSPQT
RATLLALNIQRLRILPGRVDNGIMVNIPNYSLNYYKNGEQVLSSRVIVGRPSRKTPLMSS
ALNNVVVNPPWNVPTSLIRQDILPKARYDSSYFQRHGYTVLSGWNNDAEVVDPEMIDWSM
ISPNHFPYRLRQEPGASNSLGRFKFNMPSSDAIYLHDTPNHGLFQKDIRALSSGCVRVNK
ASDLANMLLQDVGWNDARVSSTLKQGSTTYVNIRERVPVQLYYLTAWVAEDGKPQFRTDI
YNYDMAVRSGSQISQQAELLLQ
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atgtcagtagagagaagaaatccgcaacgcgcgttggcgttatactgcgctttaatttgc
ggcttgacgccaatatttaccgtatcggccacggcaccggtgatgccggtagcgtcatcg
tcagcaatgtcatcaccggcaaagagcatgacggttgctcaaagccgttctcagctattg
gcggcattgccaaaaaatgtcactccgctttattctgctgaattagcgctgctttatgcc
gcgaatcaaatgcaacctatgtggcaagaccgcgccgcagttcagcatttccaacaacaa
ttggcggaagtggcgctctccggtattcaaccacaatttatgcaatgggttaaatggctc
agtgatcctgaaattaagggattggcgcgtgatgtggtgctgtctgatgccatgctggga
tatttgcattttatctctggtgtcggcgctaatggcagtgtctggctctacagcaatgtg
ccatacaagatggctatgccgcccgccacgatattaaatcgctggcagcaggcggtacac
gaagggacgactgcgccttatctggcgtcattggctcctcagcatccgcaatatgaaaaa
atgcatcaggcgctgaaacacatgctggcggataggcgtccttggccactcatggcgaat
ggcccgagtttacgtccaggtcagctaagtgacgatattccggctctgcgagaaattctc
gacagaacgggcatgttgcaccccgttgatggcgcgccagtaaaaaccgctgaaactatc
ccagaagataatccgacgattgcggcggttaatgatgacctctctgtggatgaagagaaa
agtcgctctcaagctcatagcctggttgttagcccatctgcggctcctgttgctgatgaa
ccaatagctggggaggcgattgcgcccgcggcaccgacgagtactgctacagtgaccgac
aatgtttacacgccagagctagtggaagccgtcaaacgttttcagctgtggcatgggctg
agtgatgacggaattattggcgctcgtactcgcgagtggctgaatgtttctccacaaaca
cgggcaacattattagcattgaatattcagcgcttacgtattttgccggggcgggtggat
aacggcattatggttaacattccaaactattcgctgaactattataagaatggtgagcag
gtgctctcatccagagtgattgttggccgcccgagccgtaaaacaccgctgatgagcagt
gcgctgaataatgtggtagttaatccaccttggaatgtgccaacctctttgattcgtcag
gatattctgccgaaggcgcgatatgattccagttacttccaacgccacggatatacggta
ttgtccggctggaacaatgatgctgaagtcgttgatccggaaatgatcgattggagcatg
atttcacctaatcacttcccataccgtctacgccaggaacccggtgccagtaattcttta
gggcgcttcaagttcaatatgccaagttctgatgccatctatttacatgacacacctaat
catggattgttccagaaagatatccgtgccttgagctcaggttgtgttcgtgtgaataaa
gcctctgatttagccaatatgttattgcaggatgtggggtggaatgatgcgcgggtttcg
tcgaccctgaaacaggggagcacgacgtacgttaatattcgtgaacgtgtcccggtacaa
ttgtattacctgaccgcatgggtcgcagaggatggcaaacctcagtttagaacagacatt
tacaattatgatatggcggtgagatcaggttcacaaatctcccaacaggcagaacttttg
ctgcaataa
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