Yersinia ruckeri YRB: BD65_1651
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Entry
BD65_1651 CDS
T03611
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
yru
Yersinia ruckeri YRB
Pathway
yru03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
yru00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BD65_1651 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
yru03021
]
BD65_1651 (rpoB)
03400 DNA repair and recombination proteins [BR:
yru03400
]
BD65_1651 (rpoB)
Enzymes [BR:
yru01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BD65_1651 (rpoB)
Transcription machinery [BR:
yru03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BD65_1651 (rpoB)
DNA repair and recombination proteins [BR:
yru03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BD65_1651 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
AJI94081
LinkDB
All DBs
Position
complement(1817610..1821638)
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQDPEGQHGLEAAFRSVFPIQ
SYSGNSELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ
EVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALSFTTAQILDLFFDKVVFEIRDNKLQME
LIPERLRGETASFDIEANGKVYVEKARRITARHIRQLEKDGVDSIEVPVEYIAGKVVAKD
YIDENTGELICAANMELSLDLLAKLSQAGHKRIETLFTNDLDHGAYISETLRVDPTSDRL
SALVEIYRMMRPGEPPTREAAENLFENLFFSEDRYDLSAVGRMKFNRSLLRDEIEGSGIL
SKEDITEVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRRVRDGLVT
DEINYLSAIEEGNFVIAQANSNLDVDGRFIEDLVTCRSKGESSLFSRDQVDYMDVSTQQV
VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTSVAKR
GGTVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVNLGEPIERG
DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS
RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVSGTIIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL
TEELQILEAGLFARIHAVLVSGGIEADKLSKLPRDRWLELGLTDEDKQNQLEQLAEQYDE
MKSEFEKKMDAKRRKITQGDDLAPGVLKIVKVYLAVKRQIQPGDKMAGRHGNKGVISKIN
PIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGEKINAMLKKQEEVAK
LREFIQKAYDLGDNVCQKVDLSTFTDDEVLRLAENLKKGMPIATPVFDGATEKEIKELLQ
LGGLPTSGQITLFDGRTGEQFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGDHRMEPGMP
ESFNVLLKEIRSLGINIELEEE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcctataccgagaaaaaacgtattcgtaaggattttggtaaacgtccacaa
gttttggacataccttatctcctttctatccaacttgactcgttccagaaatttatcgag
caagatcctgaaggacagcacggcctagaagcggcattccgttctgtttttcctatccag
agctacagtggcaattcggagctgcaatacgttagctaccgtcttggtgagccagtgttt
gacgtcaaagagtgccagatccgtggcgtgacgtattcagcaccgctgcgcgttaagctg
cgtctggttatctatgagcgggaagctcctgaaggtacggttaaagacatcaaggaacaa
gaagtctacatgggtgaaattccactcatgaccgagaatggtacctttgtgattaacggt
actgagagggttatcgtatctcagctgcaccgtagtcctggcgtattctttgacagtgat
aaaggtaagacccattcatcgggtaaagtgctgtataacgcacgaattattccttatcgc
ggttcatggttggatttcgagtttgacccgaaagataacctctttgtgcgtattgaccgt
cgccgtaaattacctgcgaccatcattttacgtgcattaagctttaccactgcccagatc
ctcgatctgttctttgataaagttgtatttgaaattcgtgacaacaagctgcagatggaa
ctgattccagagcgtctgcgcggtgaaacggcttcctttgatatcgaagcaaatggcaaa
gtttacgtcgagaaagcgcgtcgtattactgctcgtcatatccgtcagcttgaaaaagat
ggcgtggatagcatcgaagtcccggttgaatacattgccggtaaagttgttgctaaagac
tacatcgatgagaacaccggtgaattgatctgtgcagccaacatggagctgtcactggat
ctgttggccaagctgagccaggctggtcacaaacgcattgaaactctgttcaccaatgac
ctggatcacggggcttatatctccgagaccctgcgcgttgacccaaccagcgatcgcttg
agcgctctggttgagatctatcgcatgatgcgtcctggtgagccaccaactcgcgaagca
gccgaaaatctgtttgagaacctgttcttctctgaagaccgctacgatctgtctgcggtt
ggccggatgaagttcaaccgttcactgctgcgtgacgagatcgaaggttccggtatcctg
agcaaagaagacatcactgaagtgatgaagaagctcatcgatatccgtaacggtaaaggc
gaagtggatgatatcgaccacttaggcaaccgtcgtattcgttccgttggtgaaatggct
gaaaaccaattccgtgttggtctggttcgcgttgagcgtgcagtgaaagagcgtttgtct
ctgggcgacctcgacacgttgatgcctcaggacatgatcaacgccaagcctatttcggcg
gcggtgaaagagttcttcggttccagccagttgtcccaatttatggaccagaacaacccg
ttgtctgaaattacgcataagcgtcgtatttctgcattgggcccgggcggtttgacccgt
gaacgtgctggctttgaagttcgagatgttcatccgactcactatggtcgtgtatgccca
atcgaaacgccagaaggtccaaacatcggtctgatcaactccttgtccgtgtacgcacag
accaatgagtatggtttcctggaaactccgtatcgtcgcgtgcgtgacggtttggtgact
gatgaaatcaactatctgtctgctattgaagaaggcaacttcgttatcgctcaggcgaac
tccaacctggacgtagacggccgcttcatcgaagacttggtcacttgtcgtagcaaaggt
gaatcaagcctgtttagccgcgatcaagttgactacatggacgtttccactcaacaggtg
gtgtccgttggtgcttctctgattccgttcctagaacacgatgatgccaaccgcgccttg
atgggtgcgaacatgcaacgtcaagcggttcctactctgcgtgctgataagccgctggtg
ggtactggtatggaacgtgcggtagcggttgactctggggtaacctctgtagccaagcgt
ggcggtactgttcagtacgtagatgcatcccgtatcgtgattaaagttaacgaagacgag
atgtacccaggcgaagccggtattgatatctataacctgaccaagtacacccgttctaac
cagaacacctgtatcaatcagatgccgtgtgtcaatctgggtgagccaatcgagcgcggc
gacgtgctggcagatggcccatcaaccgatctgggtgaactggcgttgggtcagaacatg
cgcgtagccttcatgccttggaatggttacaacttcgaagattccatcttggtctccgag
cgtgtggttcaggaagatcgctttacaactatccacattcaagaattggcctgtgtgtcg
cgtgacaccaagctggggcctgaagagatcactgccgatatcccgaacgtgggtgaagct
gcgctctccaaactggatgaatccggtatcgtgtatatcggtgctgaagtgactggcggt
gacattctggttggtaaagtaacaccgaaaggtgaaacccaactgacaccagaagagaaa
ctgttacgtgcgatcttcggtgagaaagcgtctgatgttaaagactcttctctgcgtgta
ccaaacggcgtttccggtacgattatcgatgtgcaggtctttactcgcgatggcgtagaa
aaagacaaacgtgcgttggaaatcgaagaaatgcagctgaagcaggctaagaaagacctg
actgaagaattgcagattctggaagcaggcctgtttgcacgtatccacgctgtgctggtt
tctggtggcatcgaagctgacaagctgagcaagctgccacgtgaccgctggttggaactg
ggtctgactgacgaagacaagcaaaaccaactggaacagttggccgagcagtacgacgaa
atgaaatccgaattcgagaagaagatggatgccaagcgtcgtaagatcacccaaggcgat
gatttggcaccaggcgtgctgaaaatcgttaaagtgtatctggcggttaaacgtcagatt
caaccgggtgacaagatggcgggtcgtcacggtaacaaaggtgttatctccaagatcaac
ccgatcgaagatatgccttacgatgaaaacggtacgccggtagacatcgttctgaacccg
ctgggcgtaccatcgcgtatgaacatcggtcagattctggaaacccatttggggatggca
gcgaaaggtattggcgagaaaatcaacgccatgctgaaaaagcaggaagaagttgccaaa
ctgcgtgagtttatccagaaagcctacgatctgggcgacaacgtttgtcagaaagttgat
ctgagcaccttcactgatgacgaagtactgcgtctggctgagaacctgaaaaaagggatg
ccaatcgcaacaccagtcttcgatggcgcgacagaaaaagaaatcaaggaactgttacag
ctcggtggcctgccaacttctggtcagattaccttgtttgacggccgtaccggtgagcag
ttcgagcgccaggttactgtcggctacatgtacatgctgaaactgaaccacttggttgat
gataaaatgcatgcgcgttctaccggttcttacagcttggttactcagcagccgctgggt
ggtaaagctcagttcggtggtcagcgcttcggtgagatggaagtgtgggcgttggaagct
tatggtgccgcgtacaccttgcaggaaatgcttaccgtcaagtccgacgatgtaaacggc
cgtaccaagatgtataaaaacatcgtggatggcgatcaccgtatggaaccaggcatgccg
gagtccttcaacgtattgttgaaagaaatccgctcgctgggcatcaatatcgagctggaa
gaagagtaa
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