Yersinia ruckeri YRB: BD65_2606
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Entry
BD65_2606 CDS
T03611
Symbol
mrcB
Name
(GenBank) penicillin-binding protein 1B
KO
K05365
penicillin-binding protein 1B [EC:
2.4.99.28
3.4.16.4
]
Organism
yru
Yersinia ruckeri YRB
Pathway
yru00550
Peptidoglycan biosynthesis
yru01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
yru00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
BD65_2606 (mrcB)
09180 Brite Hierarchies
09181 Protein families: metabolism
01003 Glycosyltransferases [BR:
yru01003
]
BD65_2606 (mrcB)
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
yru01011
]
BD65_2606 (mrcB)
Enzymes [BR:
yru01000
]
2. Transferases
2.4 Glycosyltransferases
2.4.99 Transferring other glycosyl groups
2.4.99.28 peptidoglycan glycosyltransferase
BD65_2606 (mrcB)
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
BD65_2606 (mrcB)
Glycosyltransferases [BR:
yru01003
]
Polysaccharide
Bacterial polysaccharide (excluding LPS)
BD65_2606 (mrcB)
Peptidoglycan biosynthesis and degradation proteins [BR:
yru01011
]
Peptidoglycan biosynthesis and degradation
Glycosyltransferase/DD-Transpeptidase (Class A PBP)
BD65_2606 (mrcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Transgly
UB2H
PBP1_TM
Transpeptidase
UvrB_inter
Motif
Other DBs
NCBI-ProteinID:
AJI95814
LinkDB
All DBs
Position
2878156..2880633
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AA seq
825 aa
AA seq
DB search
MSDDREPTGRKGKKPAAKAAPKRPLRRRRDEDDYDEDYLDDDDRDDDEDGYDDDDEDQPM
PRKVKSTPARKKRRWLGLLIKLFIVAVVLLAIYGVYLNSQIRSRIDGKVWQLPAAVYGRM
VNLEPGMAYSKKEMVNLLEGMQYRQVSRMTRPGEFTVQNNSIEMLRRPFDFPDGKEGQIR
ARLVFKDDRLAQIINLDNQRDFGFFRLDPKLITMLQSPNGEQRLFVPRAGFPDLLVDTLL
ATEDRHFYEHDGISPYSIGRAAIANLTAGKAVQGGSTLTQQLVKNLFLTNERSLLRKANE
AYMALLVDYRYSKDRILELYLNEVYLGQSGSDQIRGFPLASLYYFGRPVDELSLDQQAML
VGMVKGASLYNPWRNPTLALERRNLVLKLLQNQGIIDEELYTMLSARPLGVQPKGGVITP
QPAFMQMVRQELQQKLGDKVNDLSGVKIFTTLDPVSQDAAEKSVEDGIPALKAARNIKDL
EAAMVIVDRFSGEVRAMVGGAQPQFAGFNRAIQARRLVGSLAKPATYLTALSQPDKYRLN
TWLADQPISLKQPNGSIWQPKNYDRQFRGQVMLMDGLVNSLNVPTVNLGMALGLDQISAT
LQRLGIPKSVINPVPAMLLGAIDLTPVEVAQEYQTIASGGNRAPLSAVRSVMAEDGTVLY
QSFPQAERMVPAQAAYLTLYTMQQGVQRGTSRSLSAKFGKYNLAAKTGTTNDLRDSWFAG
IDGKEVAIVWVGRDNNGPAKLTGANGALTLYRRYLENQTPLPLVLQPPEGISQMNIDSAG
NFICDGGSWRTIPVWTENPQGLCQAAAAPVEGDGVAGWIKDMFGQ
NT seq
2478 nt
NT seq
+upstream
nt +downstream
nt
atgtctgatgaccgcgagcctacggggcgcaaaggtaagaaaccagcggccaaggccgcg
ccgaagaggccactgcgccgtcggcgcgatgaagatgattatgatgaagactatctggat
gacgatgatcgtgacgatgatgaagatggctatgatgatgacgatgaggatcaacccatg
ccaagaaaggtaaaatcgactccggcgcggaaaaagcgtcgttggcttgggttgctgatt
aagctatttatcgttgctgtggtgctgttggcgatctatggcgtctatctgaactcgcag
atccgcagtcgtattgatggcaaagtctggcaactgccagcggcggtctatggtcgtatg
gtcaaccttgaaccgggtatggcttacagtaagaaagaaatggtgaatttgctggaaggc
atgcaataccgccaagtaagccgcatgactcgaccaggtgaattcacggtgcagaacaac
agtatcgaaatgctgcgccggccatttgattttccagatggtaaagaaggccagatccgc
gcccgattggtgtttaaagatgatcgtttagcgcagatcatcaacctggataaccagcgt
gatttcggctttttccgcctcgatcccaagttgatcaccatgttgcagtcgccgaatggc
gagcagcgcctgtttgtgccacgcgctggttttccggatctgctggtggatactttgttg
gccactgaagatcgccacttttatgagcacgatggcatcagcccgtattctattggtcgc
gcggccattgccaatctgacggccggtaaagcggtgcagggcggcagtacgctgacgcaa
cagttggtaaaaaacctgtttctgaccaatgaacgctctttgctgcgtaaagccaacgaa
gcctatatggcgctgttggtggattatcgttacagcaaggatcgtattctcgagctgtat
ctcaacgaagtgtatctcggtcaaagtggtagcgatcagattcgcggtttcccgttggcc
agcctgtattactttggccgcccagtggatgagttgagtctggatcaacaggcgatgctg
gtgggaatggtgaaaggggcgtcgctgtataacccgtggcgcaacccgacactggcgttg
gaacgacgtaatctggtactgaaactgttgcagaatcagggtattatcgatgaagaactg
tacaccatgctcagtgctcgaccattaggcgtacagccgaaaggcggggtaattacaccg
caaccggcctttatgcagatggtacgtcaggaactacagcagaaactgggtgacaaggtt
aatgatctgtccggcgtgaagatctttaccaccctcgatcccgtttcacaggatgccgct
gaaaaatccgttgaagatggtattcctgcactgaaagcggcgcgtaatatcaaagacttg
gaagcggctatggtgattgtcgatcgctttagtggtgaagttcgcgcgatggttggcggg
gcacagccgcagtttgccggctttaaccgtgccattcaggctcgtcgtttggtgggttct
ctggcgaaaccggcaacgtatctgacggcattaagccagccggataaatatcgtctcaat
acctggttggccgatcagccgatttcacttaaacagccgaacggctcgatctggcagccg
aaaaactatgaccgccaattccgtgggcaagtgatgctgatggatgggctggtgaactct
ctgaacgtgccgacagttaatctggggatggcgctggggctggatcaaatcagcgcgacc
ttgcagcgtttgggcattccaaaatcggtgatcaatccagttccggccatgttgctggga
gccatcgatctgacgccggtagaagtggcacaggaatatcagactattgccagtggtggt
aatcgtgctccgttgtcagcggtgcgttcggtgatggcagaagacggtaccgtgctatat
cagagcttccctcaggccgaacgtatggtaccggcacaggcggcttatctgacgttatat
accatgcagcaaggcgtgcagcgcggtacatcccgttcgttgtcggcgaagtttggcaaa
tataatctggcggcaaaaacgggtaccaccaacgatctgcgtgatagctggtttgctggt
atcgacggcaaggaagtcgcgattgtgtgggttggtcgtgataacaatggcccggccaag
ctgaccggtgccaacggcgcgttaaccctatatcgccgttatctggaaaaccagacaccg
ttgccgctggtgctgcaaccaccggaaggcattagccagatgaacattgattctgccggt
aactttatctgtgacggcggaagctggcgtaccattcctgtgtggacagaaaatccgcaa
ggtctgtgtcaggctgccgctgcaccggttgaaggtgatggcgtcgctggctggatcaag
gatatgttcgggcagtaa
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