Yersinia similis: BF17_04305
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Entry
BF17_04305 CDS
T03057
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
ysi
Yersinia similis
Pathway
ysi02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ysi00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
BF17_04305
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ysi03021
]
BF17_04305
Transcription machinery [BR:
ysi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
BF17_04305
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DNA_ligase_A_N
HTH_SUN2
TMPIT
Motif
Other DBs
NCBI-ProteinID:
AHK18652
LinkDB
All DBs
Position
863899..865737
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AA seq
612 aa
AA seq
DB search
MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVLEEAP
DADDLMLAENTTDTDDDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEID
IAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAGESRLSDLITGFVDPNAEEDIAPTA
THVGSELSTEEMDDEDEDEDEDDDAEDDNSIDPELARQKFSDLREQYENARMEIKKNGRN
HANAAAEILKLSEVFKQFRLVPKQFDYLVNNMRAMMDRVRTQERIIMKLCVEQCKMPKKN
FVTLFSSNETSDTWFTAAVAMGKPWSEKLKDVSEDVQRSLQKLRQIEEETGLTIEQVKDI
NRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEY
RRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPE
ELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATSESLR
SATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHP
SRSEVLRSFLDD
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaacccgcagtcacagctgaagctacttgtcacccgaggtaaggagcaaggc
tatctgacctatgctgaggtcaatgaccatctgccggaagatatcgtcgattccgatcag
atcgaagacatcatccagatgattaatgacatgggcatacaggtactagaagaagcgcct
gatgctgatgatttgatgctggccgagaacaccacggataccgacgatgatgcggctgaa
gctgctgcacaggtgctttccagtgttgaatcagaaatcgggcgaaccaccgacccggtg
cgtatgtatatgcgcgaaatgggtaccgttgagctgttaacgcgtgaaggcgagattgat
attgccaaacgtatcgaagacggtatcaatcaggttcagtgttctgttgctgaataccct
gaagcgatcacttatctgttggaacaatatgatcgcgttgaagcgggcgaatctcgttta
tccgacctgatcactggctttgttgatccaaacgctgaagaagatattgccccaacagcg
acccacgttggttctgaattatccactgaagagatggatgatgaagatgaagacgaggat
gaagacgacgacgccgaagacgataacagcatcgatccagagttggcgcgccagaaattc
agcgatttgcgtgagcagtatgaaaacgcgcgtatggaaatcaagaaaaatggccgcaat
cacgcgaacgcagctgctgaaatcctgaagctttctgaagtgttcaagcagttccgtctg
gtgccaaagcagttcgattatctggtcaataacatgcgtgccatgatggatcgcgttcgt
actcaagaacgtatcatcatgaagctgtgtgttgagcagtgcaaaatgccgaagaaaaac
ttcgttacgctgttttccagcaatgaaaccagcgatacctggttcactgcggcagtggct
atgggtaaaccttggtctgaaaaactgaaagatgtctcggaagatgttcaacgtagcttg
cagaaactgcgccagatcgaagaagaaaccggtctgaccattgagcaggtaaaagacatc
aaccgccgtatgtctatcggtgaagcgaaagcgcgtcgtgccaagaaagaaatggttgag
gctaacctgcgtttggttatctctattgccaaaaaatacaccaaccgtggtttgcagttc
cttgatttgatccaggaaggcaacattggtctgatgaaagcagtagataagttcgaatac
cgtcgcggttataagttctcaacttacgcaacatggtggattcgtcaggcgatcactcgt
tcgattgcagaccaggcgcgcactatccgtattccagtacatatgattgagaccattaac
aaactcaaccgtatctcacgccagatgttgcaagagatgggccgtgagccaacgccagaa
gagctggcggaacgtatgttgatgccggaagataagatccgtaaagtgctgaagatagct
aaagagcctatctcaatggagaccccgattggtgatgacgaagattcacatctgggtgat
ttcattgaagataccactctggagctgccgctggactctgcaacctctgagagcctgcgc
tctgccacgcacgacgtgttagcaggcctgacagcccgtgaagcaaaagttctgcgtatg
cgtttcggtatcgatatgaacactgaccacacgttggaagaagtgggcaaacaattcgat
gtcacccgtgaacgtattcgtcagattgaagcgaaggcattgcgtaaactgcgtcaccca
agccgttctgaagtactgcgtagcttcctcgacgattaa
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