KEGG   Ziziphus jujuba (Chinese jujube): 107410533
Entry
107410533         CDS       T04794                                 
Name
(RefSeq) DNA polymerase epsilon catalytic subunit A isoform X1
  KO
K02324  DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
Organism
zju  Ziziphus jujuba (Chinese jujube)
Pathway
zju03030  DNA replication
zju03410  Base excision repair
zju03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:zju00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    107410533
   03410 Base excision repair
    107410533
   03420 Nucleotide excision repair
    107410533
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:zju03032]
    107410533
   03400 DNA repair and recombination proteins [BR:zju03400]
    107410533
Enzymes [BR:zju01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     107410533
DNA replication proteins [BR:zju03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   DNA polymerase epsilon complex
    107410533
DNA repair and recombination proteins [BR:zju03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     DNA polymerase epsilon complex
      107410533
SSDB
Motif
Pfam: DUF1744 DNA_pol_B_exo1 DNA_pol_B DNA_pol_B_exo2 RNase_H_2
Other DBs
NCBI-GeneID: 107410533
NCBI-ProteinID: XP_015873463
UniProt: A0A6P3ZFB9
LinkDB
Position
10:complement(join(3548132..3548492,3549557..3549663,3550104..3550316,3550415..3550585,3550743..3550853,3551590..3551656,3551727..3551887,3552189..3552237,3552383..3552645,3552750..3552809,3553353..3553427,3553647..3553730,3553813..3553914,3554032..3554164,3554821..3554885,3555052..3555232,3556756..3556943,3557314..3557388,3557505..3557702,3557781..3557928,3558646..3559091,3559289..3559431,3559550..3559604,3560276..3560476,3560663..3560758,3561060..3561203,3561282..3561362,3561494..3561581,3561764..3561940,3562680..3562759,3563051..3563156,3563390..3563484,3563560..3563683,3563890..3564008,3564610..3564714,3565546..3565659,3566378..3566554,3566910..3567074,3568569..3568652,3569206..3569328,3570091..3570225,3570348..3570434,3570812..3571029,3571130..3571218,3571419..3571579,3572092..3572187,3572304..3572363,3572476..3572541,3572930..3573091))
AA seq 2202 aa
MNGESRKRDRRDFRGSKKQKNLIRTAEEELEVKLGFDLFSEGDKRLGWLLTFASSSLEDQ
DSHKVYSCVDLYFVSQDGSTFKSKYKFRPYFYASTKDQMEMDVEAYLRRRYESQIANVEI
VEKEDLDLKNHLSGLRKSYLKLSFDTVQQLMDVKSDLLHVVERNQAKSDAAEAYESILLG
KREQKPQDFLDCIVDLREYDVPYHVRFAIDNDVRCGQWYDVSVSSTGVMLERRTDLLQRA
EVHVCAFDIETTKLPLKFPDAEYDLIMMISYMIDGQGYLIINRECVGEDIEDLEYTPKPE
YEGYFMVTNVNNELELLRKWFDHMREVKPGIYVTYNGDFFDWPFLERRATHHGLKLIDEV
GFQCNKNQGECRAKFACHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYDPLEVNPEDMVR
FAKEKPQMMASYSVSDAVSTYYLYMTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLM
VQAYKANVICPNKHQSEPEKFYGNHLLESETYIGGHVECLECGVFRSDLPASFKLDPSGY
EQLINNLDRDLQYSITVEGKMELESVSNYDEVKNAILEKLVRLRDEPIREECPLIYHLDV
AAMYPNIILTNRLQPPSIVTDEVCTACDFNRPGKTCLRKLEWVWRGEMFMAKKSDYYHLK
KQIESEFVSSKSFLDLPKMEQQTRLKDRLKKYCQKAYKRVLEKPVTEVREAGICMRENSF
YVDTVRSFRDRRYEYKGLNKVWKGRLSEAKASGNSIKIQEAQDMVVLYDSLQLAHKCILN
SFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLVERIGKPLELDTDGIWCALPGSFP
ENFTFKTIDLKKKLTISYPCVMLNVDVARNNTNDQYQTLSDPIRKTYTTHSECSIEFEVD
GPYKAMILPASKEEGVLLKKRYAVFNHDGTLAELKGFEIKRRGELKLIKVFQAELFDKFL
HGKTIEECYSVVASVANRWLDLLDNQGRDIADSELLDYISESSTMSKSLADYGEQKSCAV
TTARRLADFLGDTMVKDKGLRCQFIVACEPKGTPVSERAVPVAIFETDAEIMKFYVRKWC
KISSDVGIRSIIDWSYYKQRLSSAIQKIITIPAAMQKIANPVPRVAHPDWLHKKVREKED
KFRQQKLADMISSLKRNDLLKRNSDTVGGNNVMDEEIVRDFEDFQNSKNSANGPRPILRC
FEVNKKKNSVRTIERVISPLEQTDDGEKVNNAVSSDSVDRNVDYQGWLEIKKRKWKNNLD
KRKRQRLGNTTSLHHSKGISKLLSDATNHKEAQGRTGVNSYFRGHEAALTCCHWQIIQFV
PTSQSGQFFAWVVVEGIMLKIPLTVPRVFYLNSKAPLEEKFPGKSANKILPHGRQAYNLY
EAIIDEGQFRAESKSLTALLADPEVEGIYETKVPLEFNAIVQIGCVCKVEKTAKKRSIQD
SWGLKELQMKTTTECSYLEQSSFFYLYHSISEGRAIFIVYFPASRTIAVVVVNPYQNKDL
SLSFLERQFHEACQVLSIEPPPRNEIIFRVDYVGLVKDAEMMVQRAIYEHRHEHNGPTIA
VIECPDIQVMKSGIKALHDFPCVSVPSNARDCHYQALGWQQNAAKIGMQRCAASSQWLKE
RISLSRYAHVPLGNFELDWLIFTADVIFSRALRDQQQVLWISDDGIPDIGGINEEETCFA
DEVHQPILTYPGAYRKVTVELKIHHLAVDALLKSNKVNEMEGGALLGFESTMNSGAQAPN
EKDGFDEATSCAPAFRVLKQLIQRCLADAVASGNVYADAILQHLYRWLCSPQSKLHDPAL
HRLLHKIMKKIFALLLTEFRKLGATIIFANFSKVIIDTGKFDLSAAKAYCDSLLKTLQAR
DLFEWIELEPLHFWHSLLFMDQYNYGGIPARADESMHTESQVDIISSWNIAEYLPKKIQD
HFVFIVSQFLYIPWNYAQKQAAIRASVQDGNSCTPSITVAAGESFESHLADYLKGQISSY
FTDKLLGIVRDTVFHMKELSRSEVEHNVPLGLSRLDISVNKGDAALEFIKHVCAVLALDQ
NVQHDVLVMRKNLLKYVHVKEFAPEAEFRDLCSTFILPNVICSYCNDCRDLDLCRDSALL
AQEWRCAVPQCGQPYDREVMENALLQIVRQRERLYQLQDLVCLRCKQVKAAHLAEQCACA
GSYRCKEDVSEFHNKMRIFLNVAVQQKFQLLQECTSWILEIR
NT seq 6609 nt   +upstreamnt  +downstreamnt
atgaacggcgaaagccgaaagcgggaccgcagagactttcgaggctccaagaagcagaag
aacctaattcgcacagctgaggaggagctcgaggtcaagctagggtttgatctcttctcc
gaaggggataagaggctcggatggttgcttacttttgcttcctcatctttggaagaccaa
gactcccacaaagtctatagctgcgttgatttgtattttgtttcacaggatggttccact
ttcaaatcgaaatacaaattccggccatatttctatgcatccacgaaggaccaaatggaa
atggatgttgaagcatatttgagacgacgttatgaaagtcaaatagctaacgttgaaata
gtggagaaagaagaccttgatcttaaaaaccatttatctggtttgcgcaagtcctattta
aaactatcatttgatactgtccaacaattaatggatgtcaagagtgacctattgcatgtt
gttgaaagaaaccaggcaaaatctgatgctgcagaagcctatgagtcaatactattgggt
aaaagagaacaaaaacctcaagattttctagattgtatagttgatcttcgtgagtatgat
gtgccctaccatgttcgatttgctatcgacaatgatgtacgttgtggccaatggtatgat
gtcagtgtatcaagtactggcgttatgcttgagaggaggacagatcttctgcaacgtgct
gaagttcacgtttgtgcatttgatattgagaccacaaagcttccgctgaaatttcctgat
gctgaatatgatttaattatgatgatttcttacatgattgatgggcaaggttacttgatt
attaacagagagtgtgttggtgaggatatagaggatttggaatacactccaaaacctgaa
tatgaaggatatttcatggtgacaaatgtgaacaatgagttagagcttcttagaaagtgg
tttgaccacatgcgggaggtgaagcctggtatatatgttacatacaatggtgattttttt
gactggcctttcctggaaagaagagctacccatcatggattgaaactgattgatgaggtt
ggatttcaatgtaacaagaatcaaggggagtgtcgtgctaaatttgcttgtcatcttgat
tgctttgcgtgggtgaaacgagatagttatctccctcaagggagccaaggcctcaaggct
gttacgaaggcaaagttgggctatgatcctttggaagtgaatcctgaagatatggttcgt
tttgccaaggaaaaacctcagatgatggcctcctattctgtttctgatgctgtttcaact
tactacctgtatatgacctatgttcatcccttcattttttctcttgcaactattattcca
atgtcaccagatgaggttttgcgcaagggtagtggaaccctttgcgaaatgcttctgatg
gtccaggcttacaaggcaaatgttatctgtcctaacaagcaccaatctgagcctgaaaag
ttttatggcaatcaccttcttgaaagtgagacctatataggtggtcatgtggaatgcctt
gaatgcggtgtttttagatctgatctccctgctagttttaagcttgacccatctggctat
gagcaactgattaataaccttgatcgagatctacaatattccataacagtagagggtaag
atggagttggaatcagtgtccaattatgatgaagtgaagaatgctattctggaaaagctt
gtgaggttacgagatgagcccatacgtgaagaatgccccctcatttatcacctggacgtg
gctgctatgtatccaaacattattttaacaaacagacttcagccaccatcaatagttaca
gatgaggtttgcactgcttgtgatttcaatcggccaggcaaaacctgtcttcggaagctt
gaatgggtttggcgtggagaaatgttcatggcaaagaaaagtgactactatcacttgaag
aagcaaattgagtctgaatttgtttcttcaaaatcatttcttgacctacctaagatggag
caacaaacaagactcaaagatcgtttgaaaaaatactgtcaaaaggcatataaacgtgta
ctggagaagccagtcacggaagttcgggaagctggaatttgcatgagggaaaactcattc
tatgttgacactgttcggagcttccgggatagaagatatgaatacaaaggtcttaataag
gtctggaaggggaggttgtctgaagccaaagctagcggaaattcaataaaaatccaggaa
gcacaagatatggtagtgctttatgattcactacaacttgctcataagtgtattctcaat
tccttttatggatatgtcatgcgcaagggtgcgagatggtactcgatggaaatggctggg
gtggttacgtacactggagcaaaaattattcagaatgctcgcttactggttgaaaggatt
ggaaaaccacttgagttagatacagatggtatttggtgtgcacttcctggatctttccca
gagaactttactttcaagacaatagacttgaaaaagaagctgactatttcctatccatgt
gtcatgcttaatgttgatgtggcaagaaacaatacaaatgatcaataccagactctctca
gatcctataaggaagacgtatacaactcatagtgaatgctcaattgagtttgaagtggat
ggaccatacaaggcaatgattcttcctgcttctaaggaagaaggagtcttgcttaagaag
agatatgctgtttttaatcatgatggaacccttgctgaacttaagggtttcgagatcaag
cgtagaggcgagctgaagctcataaaagttttccaggctgaactttttgacaaatttctc
catgggaaaactatagaggaatgctattcagtcgttgcttctgtcgccaaccgatggctt
gatcttcttgataatcaaggaagggatattgctgacagtgagttgctcgattacatatca
gaatcaagcaccatgagcaagtctttggcagactatggggagcaaaagtcctgtgcagtg
acaactgcaagacgtcttgctgattttcttggtgatacaatggtcaaagacaaaggactg
cgttgccagtttatagttgcatgtgaaccgaagggaacacctgtgagcgagcgtgctgtt
cctgttgcaatttttgaaacagatgctgaaattatgaagttctatgtacggaagtggtgc
aagatctcatcagatgttggcattcggtccattattgattggtcctattacaagcaacga
cttagttcagcaattcagaaaattataacaattccagctgcaatgcaaaagattgcaaat
ccggtccctagagtggctcatcctgattggttgcataagaaggttcgtgagaaggaggac
aaatttcgccaacaaaaattagctgatatgatcagttctttgaagaggaatgatttgttg
aaaaggaatagtgatacggttggaggtaataatgtgatggatgaagagattgttagagat
tttgaagactttcaaaatagtaagaattctgcaaatggaccacgaccaattttacggtgc
tttgaagtcaataagaagaaaaattctgtcaggacaattgagagagtaatttcaccacta
gaacaaactgatgatggtgaaaaggtgaataatgctgtctcttctgatagtgtggacaga
aatgtggattatcagggatggcttgaaataaagaagagaaagtggaaaaataatctggac
aagaggaagaggcagagattgggcaatacgacttctctgcatcattctaagggtatttct
aagttgctcagtgatgcaacaaatcataaagaagcccagggcagaacaggtgttaattca
tattttagggggcatgaagcagccctaacatgctgccactggcagataatacaatttgtt
ccaacttctcaaagtggccaattttttgcttgggttgttgtggaaggaatcatgcttaag
attcctttaactgttcctcgagtattttacctcaattctaaagctccattagaagaaaaa
tttccaggaaagtctgccaacaagatactccctcacggaaggcaggcttataatctatat
gaggccataattgatgaaggtcagtttagagcagaaagcaaaagccttacagctcttctt
gcagatccagaagttgaggggatatatgaaacaaaggtgccattggagtttaatgcaatt
gttcaaattgggtgtgtctgtaaggtggaaaaaactgctaagaagcgaagtatccaagat
agctggggtctgaaagaattgcagatgaagactactacagagtgctcttatctggagcaa
tcttctttcttttacttgtatcatagtatatctgaagggcgtgctatattcatcgtgtat
ttccctgcatcacgaacaatagctgttgtggtggtgaatccttatcaaaataaagatttg
tctctgtcttttcttgaaagacaattccatgaagcttgccaagtattatcgattgagccc
cctcctcgaaatgaaataattttcagggtggactatgttgggcttgtcaaggatgctgaa
atgatggtgcaaagagcaatatacgagcacagacatgaacataatggacctacaattgct
gtcatcgaatgccctgatattcaagtgatgaagtcaggaataaaagctctacatgatttc
ccatgtgtgagcgttccttccaatgctcgtgattgtcactatcaggcacttggttggcag
caaaatgctgcaaaaattggaatgcaacgttgtgcggcatcatcccagtggttgaaagag
agaatttctctctcaagatatgcccacgttccactggggaattttgagctagactggctt
atatttactgcagatgttatattttcacgcgcattacgtgatcagcaacaggtgctttgg
atatcggatgatggaattccagacattggaggcattaatgaagaagagacatgttttgct
gatgaggtgcatcaacctattcttacgtaccctggagcatataggaaagtcaccgtggag
ctaaagattcatcatctggccgtggatgctcttctcaaaagtaacaaagtcaatgaaatg
gaaggaggggctttgttaggatttgagtcaactatgaattctggtgcacaagctcctaat
gaaaaggatggttttgatgaggctacctcatgtgcacctgcttttcgtgttctaaagcag
ttgatacagaggtgccttgcggatgcagttgcatctggaaatgtatatgctgatgcaata
ttgcaacatttgtatcgatggctttgcagcccccagtcaaaacttcatgacccagccctg
caccgcttacttcataagatcatgaaaaagatttttgcacttttgttaaccgagtttcgt
aaattgggtgccactatcatattcgcaaatttctccaaggttattatagacacgggaaaa
tttgacctgtctgcagccaaagcttactgtgatagcttgcttaaaactttgcaagctaga
gacctgtttgagtggatagagcttgaacctttgcatttctggcattccttgctttttatg
gatcagtataactatggtggaatcccagccagagctgatgaaagtatgcatactgaatct
caagtggatatcatatccagctggaatattgctgaatacttgcccaagaaaattcaggat
cattttgtttttattgtctctcagtttctgtatattccctggaattatgcacaaaagcaa
gctgctattagagcatctgtgcaggatggcaactcatgcacaccatcgattactgttgca
gctggggagagttttgaatctcatttggcagactatctcaaaggacagatcagttcatac
tttacagataagcttctgggaattgttcgtgatactgtttttcatatgaaggaattaagt
agatctgaagttgaacataatgtacctctaggattgagtcgacttgatattagtgtcaac
aaaggtgatgcagccctggagttcattaagcatgtctgtgctgttctggcccttgatcaa
aatgttcaacatgatgttctggtgatgagaaagaatctgttaaaatatgtgcatgtaaag
gagtttgctcctgaagctgagtttcgtgatctctgctcaaccttcatcctaccaaatgtc
atttgcagctactgcaatgactgtagagatctggacttgtgtcgtgattcagctctactg
gctcaggagtggcgctgtgctgtgccacaatgtgggcaaccatatgaccgtgaagtcatg
gaaaatgctcttcttcaaattgtacgccaaagagaacgtctgtaccaactacaggatttg
gtgtgccttaggtgtaagcaagtgaaagctgcacatttagcagagcaatgtgcttgtgct
ggctcatataggtgcaaggaagatgtgagcgaattccacaacaagatgcgaatattcttg
aacgttgccgttcaacagaaatttcaacttctccaggagtgtacatcatggattttagaa
attcggtag

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