Ziziphus jujuba (Chinese jujube): 107418475
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Entry
107418475 CDS
T04794
Name
(RefSeq) RNA-dependent RNA polymerase 2
KO
K11699
RNA-dependent RNA polymerase [EC:
2.7.7.48
]
Organism
zju
Ziziphus jujuba (Chinese jujube)
Brite
KEGG Orthology (KO) [BR:
zju00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
zju03036
]
107418475
Enzymes [BR:
zju01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.48 RNA-directed RNA polymerase
107418475
Chromosome and associated proteins [BR:
zju03036
]
Eukaryotic type
Gene silencing
RNA interference (RNAi) pathway
RDRC (RNA-directed RNA polymerase complex)
107418475
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RdRP
RRM_1
Motif
Other DBs
NCBI-GeneID:
107418475
NCBI-ProteinID:
XP_015882660
UniProt:
A0A6P3ZS83
LinkDB
All DBs
Position
2:complement(join(12155721..12156488,12156568..12156718,12157188..12159094,12159256..12159795))
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AA seq
1121 aa
AA seq
DB search
MAMAVEDRPTVRVTNIPHTAIAEDLLTFLESKLGPNSVFAIEISTDRKNWKSRGFGRVQF
STIEAKSRAHSLSLKNDLVFHSRNLRISEYHEDIIVRPVDPRNRVDGGVLHVGFVVKEDL
MSVLESWKGVRAWVMPERRKIEFWVWQSEECYKLEIAFEDVLESVGCCLGGEKVNAILLR
LKYGPKIYQKFSGSDIASKFCADRYHICKEDVEFLWVRTTDFSEVNSIGRSTSLLWKIDE
EILETDIFTSFPCYSEDRGGVILEDGEEFCWETKMVPLVKYRSCSSNLPYETLFQLNSLV
HTQKISFAAAADTNLIDVLSSLSAENANVILQKLHNLKSICYDPLPFVKTAARVLEGREE
TRPSSYKRLTDNNLMSCHRALITPLKIYCLGPELETSNYVVKNFAAYASDFLRVTFVDED
WSKLPISAISTSIKKGFFSEAYRSRIYYRILSVLRDGIVIGAKRFEFLAFSASQLRGNSV
WMFASNDDVKAEDIREWMGCFNKIHSVSKCAARMGQLFSSSMQTIAVPAQDVEIIPDIEV
STDGKDYCFSDGIGKISLSFARQVAQKCGLNDSPSAFQIRYGGYKGVIAVDRYSFRKLSL
RKSMLKFESKNKMLNVTKWSESMPCYLNREIVTLLSTLGVKDEAFEALQREQLNLLGKMR
TSREAALNVLENLNGSKPKNILVGMLRQGYEPNLEPYLSMMLQAHYENLLCDLKTRCRIY
VPKGRVLIGCLDETGILNYGQVFVRITMTKAELEMGDQKFFQKVDEQTCILLGKVVVTKN
PCLHPGDIRVLEAIYSVELEERGLVDCLIFPQKGARPHPNECSGGDLDGDLFSISWDVDL
IPPKTAPPMDYTGRRARIMDHDVTLEEIQNFFVDYMINDTLGAISTAHLIHADREPNKAF
NEKCLQLATLHSMAVDFAKTGAPAEMPRILKPREFPNFMERVEKPMYISNGALGKLYRAI
MDSKVAESSYFLCSGKIDQTAYDHELEVSGFEAFIKIAEKHRDQYIEKLSAIMIYYEAET
EDEILTGNLRKRAAYLQRDNIRYRDMKDRILLSLKSLQKEAKEWFHSSCKEHEYQQMASA
WYHVTYHPNFSREGMKCLSFPWIKGDILLNIKSVNSLRYKT
NT seq
3366 nt
NT seq
+upstream
nt +downstream
nt
atggccatggctgtggaagacagacccacagtccgggtcacaaacattccacatacagcc
atagccgaagacctcttaaccttcctcgaatccaaactcggtcccaactcagtcttcgcc
atcgaaatctccaccgaccgcaagaactggaagtcccgcggctttggtcgggttcagttc
tcgaccattgaagccaaatccagagcccactctctctccctcaaaaacgacctcgtcttc
cattcgcgcaatctcagaatctccgaataccacgaagacatcatcgtccgtccagtggac
cccagaaaccgagtagacggcggcgttttgcatgtgggtttcgtcgtgaaggaggacttg
atgagtgtcttggagtcttggaaaggtgttcgggcttgggtcatgcccgagaggaggaag
atcgagttctgggtttggcagagtgaggaatgttacaagctggagattgcgtttgaggat
gttttggagtctgttgggtgctgtttgggtggtgagaaagtcaatgccattcttttaagg
ctaaaatatgggccaaagatatatcagaagttctctggaagtgatatagcttcgaagttc
tgtgctgataggtatcatatttgcaaagaagatgttgaatttctctgggttcgtactaca
gatttctctgaagtgaattccattggaagatcaacttcacttttatggaaaattgatgaa
gaaattttggagacagatattttcacaagtttcccctgttatagtgaagataggggagga
gtaattttagaggatggtgaagaattctgttgggaaactaagatggttccacttgtaaaa
taccgatcgtgttcatcgaatttgccatatgagacccttttccagctcaattcccttgtt
catactcaaaaaatcagttttgctgcagcagcagatactaatctgattgacgtccttagc
agtttaagtgcagagaatgctaatgtgatacttcagaagttgcataatcttaagtcaatc
tgttatgaccctcttccgtttgtcaagactgcagcacgagtcttagaaggaagagaagaa
actcgtccctcgtcatacaaaagattaacagataataatctaatgagttgtcacagggcc
ctgattacccctttgaagatttattgtttgggtcctgagcttgaaacctctaactatgtg
gtaaaaaatttcgctgcatatgcttcagactttctgagagttacttttgtcgatgaagat
tggagtaagcttcctataagtgctatttccacaagtattaagaaagggtttttttcagaa
gcttataggagtcggatatattatcggattttgtctgttcttcgagatgggattgtgatt
ggagctaaaaggtttgaatttttggctttctcagcgagtcagcttagaggaaactctgtt
tggatgtttgcctctaatgatgatgtaaaagctgaagatattagagaatggatgggctgc
ttcaacaagattcatagtgtttccaaatgcgcagctagaatgggtcagttattcagttct
tccatgcaaaccattgctgtccctgcacaggatgtagagattattccagatattgaagtt
tctaccgatggtaaggactactgtttctcagatggtatcggaaaaatttctctgtctttt
gccaggcaagttgcacaaaagtgtgggttgaacgacagtccttcagcatttcaaattcga
tatggtggatacaagggggttattgcagttgaccgttattccttccggaagctatctttg
cgtaagagtatgcttaaatttgaatccaaaaacaaaatgctcaatgtcaccaaatggagt
gaatcaatgccctgctatttgaacagagagattgtcaccctgttgtctaccttaggagtg
aaggatgaagcatttgaagcattgcaacgcgaacaactgaatctgcttggaaaaatgcgg
acaagcagagaggcagcattgaatgttttagagaatttaaatggatctaaaccaaaaaat
attctggtagggatgttgcgacaaggttacgagccaaacttagaaccatacctctcaatg
atgcttcaggcacattatgagaacttgttgtgtgacttaaaaaccagatgccggatatat
gtcccaaagggacgggtgctgattggatgcttggacgaaactggtatcttaaattatggt
caagtttttgttcgcatcaccatgacaaaagcagagctagaaatgggggatcaaaaattt
ttccagaaggtggatgagcaaacatgtatattattggggaaggtggttgttaccaaaaat
ccatgtcttcatcccggtgacatcagggtcctcgaggctatctacagcgtggaattggaa
gaaaggggtttggtggattgtctcatctttcctcaaaaaggagcaaggcctcatccaaat
gaatgctctggtggtgatcttgatggagacttgttttccatcagttgggatgtagatctc
attccacctaaaactgcacctcccatggactacactggacggagagctcgtataatggat
cacgatgtgaccctagaggaaattcaaaatttttttgttgattacatgatcaatgatacc
ttgggtgccatctcaactgcacatttgattcatgctgatcgtgaacccaataaagctttc
aatgaaaagtgcctacagttagcaacactgcactccatggcagtcgactttgcaaaaact
ggtgcacctgctgaaatgcccagaattttgaaaccgagggaatttccaaatttcatggag
agggtagaaaagcccatgtatatctccaatggggcgttgggaaaactctaccgtgcaatt
atggattcgaaggtggcagaaagttcatactttctatgctcagggaagattgatcaaaca
gcttacgatcatgaacttgaagtgagtggttttgaggccttcatcaaaattgcagagaaa
cacagggatcaatacatagagaaactgagtgccataatgatttattatgaggcagagact
gaggatgagatactgacaggcaatctgcggaaacgtgcagcatatttgcagcgtgataat
attagatacagagatatgaaggatcggattttgctgtcgttgaaaagcctgcagaaggaa
gccaaagagtggtttcatagtagctgcaaagagcatgaatatcagcagatggcatcagca
tggtaccatgtgacttaccacccaaatttttcccgtgaaggcatgaagtgcttgagcttt
ccatggatcaaaggtgatattctgcttaacataaaatctgtaaatagcctgagatacaaa
acataa
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