Zea mays (maize): 100383807
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Entry
100383807 CDS
T01088
Name
(RefSeq) uncharacterized protein LOC100383807
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
zma
Zea mays (maize)
Pathway
zma03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zma00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100383807
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zma03019
]
100383807
Enzymes [BR:
zma01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
100383807
Messenger RNA biogenesis [BR:
zma03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
100383807
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
100383807
NCBI-ProteinID:
NP_001349076
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Position
4:complement(87760852..87769070)
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AA seq
597 aa
AA seq
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MAAPRAAAASAKQVTRQNFAEAVLELRAHLEACDYVAVAAQKTGAPTGWRRALPVDTAET
AYLKAKLAAESFQPLQIAVCPFRQRNSYPSTLVAYPYNFHLFPRDELQLGMPSYSFSCQP
CYLSTIANDGFDFNMCIYDGISYLSRVQESLAREKIFTPRPHQLLSSPNTSVADSVFMNR
IKSRIVNWRKRYADPSKKHDGSLVSSLSRLILGAETYGSRPSMSIDVCSDRQVQLVLEAV
NHISDDLVSLVPHKAGVGRAVRVIFTNSKEDKNLLLMDIQKLEDEQNFKFRGFREVIDLL
SSSQKPIISYSCLNDLTMLHTKFIAPLPPNMHEFMCSLKMVFPNVVDISHLWRQIGPLRK
AKNIQAALSYLQRQYFVPIEIEIPQQDGTSSITKNEQNVLRITKLFAKLSNLLKISPECQ
LQSREQCTAVEEYCNIFYPSCVVGGSDDANFAFESDTTETVSTDNIIFLWGFREKSVKEL
KSYLIGLHQAFSEDFEVKLLDKTCSALIFRDSNTAMQLLKEIGSEGPSLNRFFSEGLKAA
GFEVYKKVCRLGLWDSDLAEVLEDVSSELGVPTLPECSTSQIYWNSELMLDLKEYLE
NT seq
1794 nt
NT seq
+upstream
nt +downstream
nt
atggctgccccgcgcgccgcggcggcgtcggcgaagcaggtgacgaggcagaactttgcg
gaggccgtgctggagctgagggcccacctggaggcatgcgactacgtggccgtggcggcg
cagaagaccggtgccccgacgggatggcgccgcgcgttgccggtggacactgcggaaacg
gcgtatctcaaggccaagctcgccgcagagtcctttcagccactccagatcgccgtctgc
cccttcaggcagcgcaactcttacccgtctaccctcgtcgcctacccgtacaattttcac
ttatttcctagagatgaactacagctcggaatgccttcatacagtttctcttgtcaacca
tgttatttatcaactatagctaatgatggttttgatttcaatatgtgcatatatgatggt
atttcttatctatcaagggttcaagaatccttagcaagggaaaagatctttactcctcgt
cctcaccaattgttgtcatcaccaaacacatcagttgctgactcagttttcatgaataga
ataaagtctaggatagtgaactggcgaaaaagatatgctgacccaagtaaaaaacatgat
ggctctttggttagttcccttagcagattaatattgggtgctgaaacgtatggttccagg
cccagtatgagtattgatgtctgcagtgatcggcaagttcaattggtcttggaggcagta
aaccatatctctgatgaccttgtatctctcgttccacacaaagctggagttggtagggct
gtgcgtgtgatctttactaattcgaaagaggataagaatcttctcctgatggatatccag
aaattagaagatgaacaaaactttaaattccgtgggtttcgagaagttattgatctacta
tcatcttcacagaagccaatcatatcatacagttgcttgaatgatctgacaatgctgcac
accaaattcattgcacctcttccgccaaacatgcatgaatttatgtgttctctaaaaatg
gtcttccctaatgttgttgatatcagccacctgtggaggcaaattggccctttgagaaaa
gcgaagaatatacaagccgctctcagttacttacaaagacagtactttgtgccaattgaa
atagaaataccacagcaagatggtacaagcagtataacaaaaaatgagcaaaatgttctg
agaataacaaagttatttgctaaactaagcaatttactgaaaatcagtcctgagtgccaa
ctgcaatctcgtgaacagtgcactgcagttgaagagtattgtaacatcttctatccaagt
tgtgtggtcggaggttctgacgatgctaactttgcttttgagtcagacaccacagaaact
gtgagcactgataacatcatcttcttgtggggctttagggaaaaatctgtgaaggagtta
aaatcgtaccttattggcttacatcaagccttttcagaggattttgaggtcaagttgttg
gataagacatgctcagctttgatattccgtgattctaatactgcaatgcagttactaaaa
gaaataggctcagaaggcccctcactaaacagattcttctcagaaggtctgaaagctgca
ggttttgaagtgtacaaaaaggtctgcaggttaggactttgggattcagatttagctgag
gtcctcgaggatgtttcatctgagctaggtgttccgacacttcctgagtgcagcacctct
cagatatactggaatagtgaattaatgctggatctgaaggagtatctggaatga
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